G347900


Basic Information

Item Value
gene id G347900
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000136
NCBI id null
chromosome length 2054048
location 295357 ~ 297004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU395996
AGATTGTTTTTGAATGTATCGATGCATTTTAAGCATGTTGTGATTCTTTTTAAGAATGTAGTAATTTTTTTTTTAAAGGAACGATTCTTTCTGAGAAAAGTAGCGATTCTTTTGGGGAAAAGTAGCGATTCTGGTTTTAAATAAATGTATCAGTGCTTTTTGAATTAATGTATCAATGCAATTCTTTTTGAAAAATAAAAAAAATTAAAAAATTAAAAAAAAAAATTGAAAAGTTTCAACATTTTAGAGTGAGAAGAAGAAGTTTATTAGACTTTCTCAAGCCAACTTAATAATACACAGATGTCAAACACATAAATGTCTGCCTCAGCGCTGTAATGTGACATGTTTTTGACTTTTGCTCCTTTCCGGTTGCTCTCTTTACCAACGGACCAGAGTTTCTCAATGTGAACCTCCCCAAGCGGAGCCCCTCTCTGTTATCCCACTGTGGTTTTCTTCCTGATGACTGTGCTTTTACTAAAATAACACTGCATGAATTCACAGTTAGACCAGCTAATAGCCTATAACAGGGAAAGAATAGTCACTCACTCTTTTTTTTAATTATTTTAATGTGGATGGATCCAGTCTTTTTACTATGGAAAGCTGTTTCAGAATTCACCATTTAACATTTGTTTCTAGTAATTGCGACTCACTCAGATCTTACAATATGACTTGTTTTCTTATTTCAATAAGCATTTATTTACTTAGAGATTGAAACAGACTTCTATTTGCTAACTTGATCATAGAGACGTTTAGACTTTGTGCTGTTGAGCCGCAGCTTCTCACCAGGTGGTCTTATATCACGACTGTCGGTTTTCTATGTCAACAGAGTAAGCTGAGATTCAAAAGGGCATTATGCCAGTGATCTACTGTATCTCTTGACACACATTCTGAAGTACACACACACACACACAAACACATCAGACCTCATGTCATTGCCTCTCCCCATGTTGAATATGCCCTGTAAAGGCCCACGTTGATGTCCTTTGCTCTCCAAACAGCAAACACCTCCCCAGTGCCCACTGGCTTCAGCCTAGAACGTGAGTGTAACTTTAGAGTATCCTATATTTACCCTAGTACTGTGCGCCTGGAGGGTCTGCGGTGTACTACTGCATGCCATGAATGTGTGAGAGGACAAACCCATTTTATGAACGCTGTGGAGTCTTGCAAAGAGTATTCTGAGTATAGGTTTTCATGAATGTGGATTGAATTGGGGTTATAGTTTTTGCAGAATGCGCTCTTAGGGGCATATTGGTCCAATTTCACAGACAGGGCTTAAACTAAGCTAGGATTAGGCCTTAGTTCAATTAGGGGCATTTAAGTAGCTTTTATAAATGTTAACATTTCATAAATCCTCTCCGTGGCTTCATGGGATAGTAAAGTGTCCATCGTCTGCGCACTTTAGAATCTCGCCGGAAGTAGCACGTACTTCTGGGTACGTTTTGTCTACTGTTTTATGAGTAGTGACTTTTTATCACATACTGTTTTTCATCTACTATATAGTAGGGAAGTTTTTTGGATTTGGATTTTGGATGCTGCCCAAATGTCTTTGAGAATGTACGACCAGATGAAATCTCTAAATTATCCAAGTTGACAGAGTGTGTTAAAGATATAAAATATTGGATGGTAGCAGGTTAAAAAGTAGCGGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU395996 True 1648 lncRNA 0.38 1 295357 297004

Neighbor

gene id symbol gene type direction distance location
CI01000136_00283083_00288092 TEKT3 coding downstream 6868 283043 ~ 288489 (-)
CI01000136_00261536_00270931 PMP22B, PMP22 coding downstream 23838 260454 ~ 271519 (-)
CI01000136_00117448_00133110 NA coding downstream 161668 117014 ~ 134788 (-)
CI01000136_00012060_00014460 NA coding downstream 279792 11814 ~ 15565 (-)
CI01000136_00330405_00331394 CDC42EP4B, CDC42EP4 coding upstream 32241 329245 ~ 331513 (-)
CI01000136_00357437_00448405 SDK2 coding upstream 60424 357428 ~ 448459 (-)
CI01000136_01339600_01342904 NA coding upstream 1040722 1337726 ~ 1342904 (-)
CI01000136_01611161_01611888 NA coding upstream 1313645 1610649 ~ 1612568 (-)
CI01000136_01961834_02044196 NA coding upstream 1664590 1961594 ~ 2044196 (-)
G347929 NA non-coding downstream 5392 289740 ~ 289965 (-)
G347822 NA non-coding downstream 188623 102473 ~ 106734 (-)
G347824 NA non-coding downstream 229520 64570 ~ 65837 (-)
G347811 NA non-coding downstream 253561 41527 ~ 41796 (-)
G347904 NA non-coding upstream 15917 312921 ~ 313745 (-)
G347950 NA non-coding upstream 143667 440671 ~ 887473 (-)
G348010 NA non-coding upstream 555142 852146 ~ 857924 (-)
G348083 NA non-coding upstream 596114 893118 ~ 893327 (-)
G348089 NA non-coding upstream 600238 897242 ~ 899810 (-)
G348257 NA other upstream 910670 1207674 ~ 1207964 (-)
G348732 NA other upstream 1470446 1767450 ~ 1782356 (-)
G348891 NA other upstream 1632989 1929993 ~ 1930356 (-)

Expression


Co-expression Network