Gene
RNA
| Item | Value |
|---|---|
| gene id | G348257 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000136 |
| NCBI id | null |
| chromosome length | 2054048 |
| location | 1207674 ~ 1207964 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU396380 | True | 291 | TUCP | 0.49 | 1 | 1207674 | 1207964 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000136_00357437_00448405 | SDK2 | coding | downstream | 759215 | 357428 ~ 448459 (-) |
| CI01000136_00330405_00331394 | CDC42EP4B, CDC42EP4 | coding | downstream | 876161 | 329245 ~ 331513 (-) |
| CI01000136_00283083_00288092 | TEKT3 | coding | downstream | 919185 | 283043 ~ 288489 (-) |
| CI01000136_00261536_00270931 | PMP22B, PMP22 | coding | downstream | 936155 | 260454 ~ 271519 (-) |
| CI01000136_00117448_00133110 | NA | coding | downstream | 1073985 | 117014 ~ 134788 (-) |
| CI01000136_01339600_01342904 | NA | coding | upstream | 129762 | 1337726 ~ 1342904 (-) |
| CI01000136_01611161_01611888 | NA | coding | upstream | 402685 | 1610649 ~ 1612568 (-) |
| CI01000136_01961834_02044196 | NA | coding | upstream | 753630 | 1961594 ~ 2044196 (-) |
| G348235 | NA | non-coding | downstream | 29192 | 1178176 ~ 1178482 (-) |
| G348230 | NA | non-coding | downstream | 33283 | 1174095 ~ 1174391 (-) |
| G348193 | NA | non-coding | downstream | 95571 | 1111706 ~ 1112103 (-) |
| G348187 | NA | non-coding | downstream | 106339 | 1099638 ~ 1101335 (-) |
| G348172 | NA | non-coding | downstream | 110475 | 1061901 ~ 1097199 (-) |
| G348296 | NA | non-coding | upstream | 48189 | 1256153 ~ 1256379 (-) |
| G348297 | NA | non-coding | upstream | 54354 | 1262318 ~ 1262620 (-) |
| G348300 | NA | non-coding | upstream | 56746 | 1264710 ~ 1265017 (-) |
| G348308 | NA | non-coding | upstream | 64824 | 1272788 ~ 1272994 (-) |
| G348312 | NA | non-coding | upstream | 67400 | 1275364 ~ 1275654 (-) |
| G348732 | NA | other | upstream | 559486 | 1767450 ~ 1782356 (-) |
| G348891 | NA | other | upstream | 722029 | 1929993 ~ 1930356 (-) |
