Fish Transcriptome and Expression Database

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model fish

XLOC_011547 (CT573453.1)

Basic Information

Item	Value
gene id	XLOC_011547
gene name	CT573453.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	32069258 ~ 32069372 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023004
gctggcagctagctctctgcaactcttacatggttgCTCACTGAAGCTATGCAGGGCTGCAcctagtcagtacctggatggaagaccacatgggaaagctgggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109529

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00023004	True	115	rRNA	0.54	1	32069258	32069372

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011546	INSYN2A	coding	upstream	62026	31914877 ~ 32007232 (+)
XLOC_011545	eef1akmt2	coding	upstream	245288	31820401 ~ 31823970 (+)
XLOC_011544	arhgap5	coding	upstream	270993	31739418 ~ 31798265 (+)
XLOC_011543	nubpl	coding	upstream	342390	31719034 ~ 31726868 (+)
XLOC_011542	cinp	coding	upstream	446036	31621788 ~ 31623222 (+)
XLOC_011548	NA	coding	downstream	33534	32102906 ~ 32112037 (+)
XLOC_011549	adam12	coding	downstream	89579	32158951 ~ 32334107 (+)
XLOC_011550	dhx32b	coding	downstream	273749	32343121 ~ 32360489 (+)
XLOC_011551	si:ch211-139d20.3	coding	downstream	291301	32360673 ~ 32364957 (+)
XLOC_011552	NA	coding	downstream	295736	32365108 ~ 32527320 (+)
XLOC_011538	NA	non-coding	upstream	497769	31571013 ~ 31571489 (+)
XLOC_011533	BX571712.3	non-coding	upstream	941420	31125155 ~ 31127838 (+)
XLOC_011529	NA	non-coding	upstream	1324086	30744729 ~ 30745172 (+)
XLOC_011525	CR628334.1	non-coding	upstream	1572418	30496724 ~ 30496840 (+)
XLOC_011521	CT027582.1	non-coding	upstream	2340515	29723351 ~ 29728743 (+)
XLOC_011553	NA	non-coding	downstream	353227	32422599 ~ 32423550 (+)
XLOC_011554	CR627496.2	non-coding	downstream	387431	32456803 ~ 32456919 (+)
XLOC_011555	NA	non-coding	downstream	401300	32470672 ~ 32497173 (+)

Expression

Co-expression Network