XLOC_011555


Basic Information

Item Value
gene id XLOC_011555
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32470672 ~ 32497173 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024709
CACAAGTGTAAATCTTGAAGCAAACAGATGTATCTTGTGTGATCCACTCACCGAAGAGTTTATTTAGCACAGAAGACAATGACAAAAAGAAAACTACAGTAGTTGgctttaaaaaactgtttaaataactGAATTCCACTTCGTTAGATATATGTTAACCCCTTAGCGGTGTATGGGTTAGTTTAATGATGCTATTCATGCATTTTTGGAAGCTATCCAACACTATTATACAGCATGGAAGGGCCAGGATAGAATGTATAACTACTTTGACTGTGTTAATCTTtttcttttctattattttttagtttttttcaccCTTTGTTATGATAGGACAGGagagatttcagacaggaaagcattgtgagcagagagagggaaaggatcagCAAGGGACCtcaagctgggaatcgaactcaggtcgccgtgagcaGgcgACACAGTTGCTCAGTGTTGAGCActgacacctcacagcaaaaaggttgctggttcgagcccgagctgggccagttggtatctctgtgtggagtttgcatgctctctttctgttggcgtgggcttcctccaggtgctctgcttcccccacagtccaaaaacatgcgGATCTATCATATTTGTTGAGAACTGAGCTATGTTTGACTCCACGCCATTTTTTCACGAATGACTTTTGGGACCTCACTTTGTCCGTTCAACAATGATGTCTTCTGTTAACTGCTCTCACAGCAGCTAAAAATTGCTGGTCAATCGCTGGTATCCTCCTCATACCATGGACAGATGAACCTGGACTGTGGATTTGTTGGACATTCTCTTGATGGAACTCTCAACTTTCCATATACAGCATGCGCTAATGTGAAAACTGTCAGTATATGGCATTCAGCTTTTGATGTTGTGTCGTCTTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024709 True 897 lncRNA 0.42 3 32470672 32497173

Neighbor

gene id symbol gene type direction distance location
XLOC_011554 CR627496.2 coding upstream 13753 32456803 ~ 32456919 (+)
XLOC_011553 NA coding upstream 47122 32422599 ~ 32423550 (+)
XLOC_011551 si:ch211-139d20.3 coding upstream 105715 32360673 ~ 32364957 (+)
XLOC_011550 dhx32b coding upstream 110183 32343121 ~ 32360489 (+)
XLOC_011549 adam12 coding upstream 136565 32158951 ~ 32334107 (+)
XLOC_011556 gcfc2 coding downstream 34681 32531854 ~ 32551256 (+)
XLOC_011557 eva1a coding downstream 74411 32571584 ~ 32608521 (+)
XLOC_011558 ctsba coding downstream 125758 32622931 ~ 32631514 (+)
XLOC_011559 BX936381.1 coding downstream 155208 32652381 ~ 32652505 (+)
XLOC_011560 BX936381.2 coding downstream 204532 32701705 ~ 32701821 (+)
XLOC_011548 NA non-coding upstream 358635 32102906 ~ 32112037 (+)
XLOC_011547 CT573453.1 non-coding upstream 401300 32069258 ~ 32069372 (+)
XLOC_011538 NA non-coding upstream 899183 31571013 ~ 31571489 (+)
XLOC_011561 NA non-coding downstream 219024 32716197 ~ 32716792 (+)
XLOC_011562 NA non-coding downstream 283529 32780702 ~ 32870816 (+)
XLOC_011563 NA non-coding downstream 605330 33102503 ~ 33111166 (+)

Expression


Co-expression Network