XLOC_011566 (snx9a)


Basic Information

Item Value
gene id XLOC_011566
gene name snx9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33158294 ~ 33201840 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023028
GGAGGAAGAGCCGCTCTCACAGCTCAATAAGTCACACATTTTGAGGCCAATGTGCTGAAGTTTTCCGGGTCTCAGTTAGGGAAAGAGGACGAAACATCCACGTTTTCAACGCCCATATCTCGTTATATGGGTCATATAGCTGGATTTTGTCGAGCTATGTTTTGCTAATCGACAGCGTTCACTGCTgcataacacaaaaacaaacgcGTAATTTGCGCTTCATTTAGGgagagaaaggtttgtttttacTACGTTTTTAGACATCATATCGCATGTTAATGGTGATTAATATATTGATACCACGATGGCAGTGAAGGCTCAGGTATTATATGACTTCACTGCTGAGCCTGGCAACAATGAGCTGACTGTTCATGAAGGTGAAACGCTCACCATTACTAACCAGAATGTAGGCGGTGGCTGGGTAGAGGCTCAGAATTCCAGAGGAAATGTAGGCCTGGTGCCAGTGGACTATGTTGAGGTGAACTCTGCTTCCGCACAAGCACCGGCGACACAATACATTGATGCCCGCAATCAAGGCAACAACAACAGTACGGCAAATACTCAGGTACGGTACCACATCAGTTAAAACCATTTGTACTTTTCACTTGATCATGGCAACTGTCAAAACATTGGTAACTGTATCTGTTCCTCAAATGAAATGCAAAGCAGCCTTTACTAAAAATAAGTAGCTGCAACCCACAAAACCCACTATTTAAATTTCAGTTTTTCTTCTGCATTTTTGCAGCCAACTTTTACTAGAAATCCACAGTCATTTAATGAGAGTTCTGCTGaa
>TCONS_00023029
GAAGTTTTCCGGGTCTCAGTTAGGGAAAGAGGACGAAACATCCACGTTTTCAACGCCCATATCTCGTTATATGGGTCATATAGCTGGATTTTGTCGAGCTATGTTTTGCTAATCGACAGCGTTCACTGCTgcataacacaaaaacaaacgcGTAATTTGCGCTTCATTTAGGgagagaaaggtttgtttttacTACGTTTTTAGACATCATATCGCATGTTAATGGTGATTAATATATTGATACCACGATGGCAGTGAAGGCTCAGGTATTATATGACTTCACTGCTGAGCCTGGCAACAATGAGCTGACTGTTCATGAAGGTGAAACGCTCACCATTACTAACCAGAATGTAGGCGGTGGCTGGGTAGAGGCTCAGAATTCCAGAGGAAATGTAGGCCTGGTGCCAGTGGACTATGTTGAGGTGAACTCTGCTTCCGCACAAGCACCGGCGACACAATACATTGATGCCCGCAATCAAGGCAACAACAACAGTACGGCAAATACTCAGGGGGTTAATGGAAATGAGGCTTGGACTGCCACAACATGGTCTAACAGCTACCCTGCAGACAACTGGAATTACACTGAACAGGAACCAGCAGGCAACAATGGTTCCGTGTATTCCTTCGATGAGGAATGGGATGATGATTCTGATGATGGAAAGTCGACTGGTGGTTATGGAGGCTCGCAGGCGGAAGATGGGGGAACCATGCAGCGGAGTGGAGCTCACTCCACAATGAAATTATCTCTCAACAAGTTTCCAGGGTTTTCTAAGACCCCAAACCCAGAAGTGTATCTCCTTACCAAGCACATAACTAAAGGAAATGACAGACTGTCTGTTTATcCAGGCGAGGTTGGTCCAGTATGGTTATATCCACAAACACAGTTAGATTGTGTAGTGGCCGATCCCAAAAAGGGTTCAAAAATGTATGGCCTGAAGAGCTACATTGAATATCAGATCACACCTAATACTACAAACAGACCCGTCAATCACCGATACAAACACTTTGACTGGTTATATGAGAGGCTGGTGGAGAAGTTTGCCTGTGCTCTGCCAGTCCCAGGTCTGCCTGATAAACAAGTTACAGGCCGATTTGAAGAGGAATTTATCAAAATGCGCATGGAGCGCCTGCAGGGCTGGATGTCCCGGATGTGCAGACATCCTGTAATCTCAAACAGTGAAGTTTTTCAGCTCTTCCTTAACTACAGAGACGAGAAGgaGTGGAAACTAGGGAAGCGGAAAGCGGAGAAAGATGAAACGGTGGGAGTGAAAATCTTCTCCACCATTGATCCAGAGCTCCCAGAGTTGGATCCTGCTCAAGTAGAGCAGAAGTATGAAGTGTACAACCAGTTTACCAGATCTATGGACAACAGTGTTAAAGAACTACTAGCAGTTGGGAATCTTCACTGGAAAAGATGTACAGGCCCATTGCAGAAGGAGTATCGGCAGATTGGAAAGGCATTTCAGAACATGTCATCAGTTTTCAACACCAGTGGATACCCAAgGGAATCAACTCTGACAGAAGCATTAACTGCAACAGGGAAAACGTACGAGGAAATAGCGGAAGTCATTGCAGCTCAGCCAAGGAAAGATCTTCATTTCCTGTTGGAAACAAACAACGAATACAAGGGGCTGCTGGGCTGCTTCCCTGACACAATAGGAGTTCACAAGGTAACAATCTGTgCTGCCATTGATAAAGTGAAAGAAGCTGATCATTTGGTGATGACGAACAAGATCAGCCAGCAAGACAAACACACAATGGAAAAAAACCTCAGCACCATGTCTTACGCATTACAAGCGGAGATGAATCACTTTCACAGCAACCGCATCTATGACTACAACAGACTCATGCAGTTCTACCTAGAGGAGCAGGTCAAGTTCTACGAAACGATTGCAGAAAAGCTGAAGAAAGCGCTCGGTCAGTACACCACCATATGAGGACACAGTCAAAACAGCAATACTCATCAAACTGTCATGGGAACATCAAAAAAAAACTGATGCTGCTTTTGCTCTTTATAACATTAATTCAGAATTAACCATCTTGTTTCCACTTAAATGTATTAAAGCTTTGTGAAATATAGAAAATATAGGTTATAAGGGAACAAACTATGTAAGATTCTATTGACTAACCAATTATTTTGTTCACAGAAAGAAGATTTAATCAATTGTATCTGTTACTTGTGCTAATGCAACACACTCCTGATAGTAAGACATGTCGTTTTCTGTGCAAATCGAAGTCTCTCAGGGATGCGTTCACTCGGACTGGGCCTTCTAAACCAAAATGGAGTTTATTAACGTCTTAATTACATTTTCAGACATGATTTTATTTACTTGTAATGTGTGAAATAATATGTGAATCTGCAGAGTCCTGCGATTAGGATGGCAAAACTCAGAAGACTGATTGCCTGCTGGTTctcttaaagcagtgtttctcaaccatgttcctggagaccaacactgcatgttttggatgtctcctttgtgtgtcacacccattacaggtctttcagtctctgctaatgagctgatgctCTGAATccggtgtgtttggttaaggagaaagggaaaatgtgcagtgctggtggtcctcctggaacgtggttgagaaacgctGCCttgaaggcatagttcacccaaaaatgaaaattctaaaatCGTTTACTCATTCTCTGTTTGAGATTccattgaacacaaatgaagatattctgaagaatgttggggagaaaaaaacagctattgatttcaattgtatctttttatTGCTGCTTGTGCTGTAAATGGCCACAACAGTTAATAATCAGAataatttgttttgtgttcaacagaagaaagaagttcataaaagtttaaaaccactttaGTGTGAGGAAATGTaccttttttggtgaactatccctttaatat
>TCONS_00023030
GTTAGATTGTGTAGTGGCCGATCCCAAAAAGGGTTCAAAAATGTATGGCCTGAAGAGCTACATTGAATATCAGATCACACCTAATGTAAGTCTCTTCGAaacaccattaataataatattgggtCTTTGCCACTGTTTGGCTAAGCTGTCCGAATTCTTTTTCAGACTACAAACAGACCCGTCAATCACCGATACAAACACTTTGACTGGTTATATGAGAGGCTGGTGGAGAAGTTTGCCTGTGCTCTGCCAGTCCCAGGTCTGCCTGATAAACAAGTTACAGGCCGATTTGAAGAGGAATTTATCAAAATGCGCATGGAGCGCCTGCAGGGCTGGATGTCCCGGATGTGCAGACATCCTGTAATCTCAAACAGTGAAGTTTTTCAGCTCTTCCTTAACTACAGAGACGAGAAGgaGTGGAAACTAGGGAAGCGGAAAGCGGAGAAAGATGAAACGGTGGGAGTGAAAATCTTCTCCACCATTGATCCAGAGCTCCCAGAGTTGGATCCTGCTCAAGTAGAGCAGAAGTATGAAGTGTACAACCAGTTTACCAGATCTATGGACAACAGTGTTAAAGAACTACTAGCAGTTGGGAATCTTCACTGGAAAAGATGTACAGGCCCATTGCAGAAGGAGTATCGGCAGATTGGAAAGGCATTTCAGAACATGTCATCAGTTTTCAACACCAGTGGATACCCAAgGGAATCAACTCTGACAGAAGCATTAACTGCAACAGGGAAAACGTACGAGGAAATAGCGGAAGTCATTGCAGCTCAGCCAAGGAAAGATCTTCATTTCCTGTTGGAAACAAACAACGAATACAAGGGGCTGCTGGGCTGCTTCCCTG

Function

symbol description
snx9a Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis; intracellular protein transport; and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Is expressed in blood. Orthologous to human SNX9 (sorting nexin 9).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0015031 protein transport biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-66 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis; intracellular protein transport; and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Is expressed in blood. Orthologous to human SNX9 (sorting nexin 9).

Ensembl:

ensembl_id ENSDARG00000000837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023028 False 793 processed_transcript 0.42 4 33158294 33173153
TCONS_00023029 False 2903 mRNA 0.42 18 33158350 33201840
TCONS_00023030 True 847 lncRNA 0.45 7 33184337 33194021

Neighbor

gene id symbol gene type direction distance location
XLOC_011565 NA coding upstream 36498 33120580 ~ 33121796 (+)
XLOC_011564 NA coding upstream 37784 33118538 ~ 33120510 (+)
XLOC_011563 NA coding upstream 47128 33102503 ~ 33111166 (+)
XLOC_011562 NA coding upstream 287478 32780702 ~ 32870816 (+)
XLOC_011561 NA coding upstream 441502 32716197 ~ 32716792 (+)
XLOC_011567 pomca coding downstream 25115 33226955 ~ 33230039 (+)
XLOC_011568 dnajc27 coding downstream 94596 33296436 ~ 33309689 (+)
XLOC_011569 BX323819.1 coding downstream 96508 33298348 ~ 33298470 (+)
XLOC_011570 si:ch211-132f19.7 coding downstream 109944 33311784 ~ 33339626 (+)
XLOC_011571 xdh coding downstream 138835 33340675 ~ 33374538 (+)
XLOC_011577 BX957235.1 non-coding downstream 383506 33585346 ~ 33585462 (+)
XLOC_011582 NA non-coding downstream 1067280 34269120 ~ 34287056 (+)
XLOC_011583 NA non-coding downstream 1432258 34634098 ~ 34675436 (+)
XLOC_011587 CR556709.1 non-coding downstream 2076948 35278788 ~ 35288741 (+)

Expression


Co-expression Network