G350832



Basic Information


Item Value
gene id G350832
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000140
NCBI id null
chromosome length 2494207
location 1504386 ~ 1507708 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU399486
TGTTTGTTCATGACAGTTTTATTAAGTAAACAAAAAGGTCAGTGCTGACATTCACACATGCTTGACAAGTGCAACTGCACAAGAAACTACAAAAGAAAGAGAATCAGCTTCCTGTCAATAAATACACGGGCCGCTAGCAGTGCGCGCTCAGCAGGGGTGATGATCCGGGACACGCTTCCTGAAACACTGGGAGCAGCTTTGATGATGTTGTCCACGCGCAGGATCATCTCGGCAGCCTCAGCGGCGCTCAGCAGCACCTGTCTCTTCACCTGGAAGCTCTCGGTGATGCCCAGCGCCGCCATGTCTCCCACGCAGCCCTGGGTCATGTCCAGGCCAAAAGTGATCTTCTTGTCCTGGTGGGCGGCTCTCAGCTGGGACACCAGCTCTGCACTGTCATATCCTGCGTTATCGGCGATGATGGTGGGCAGCATCCTCAGGGCTTTAGCGAAGGACTCCATGGCCACGGCCTCTTTGCCTGGCGTCCGGTTGGCCAGATCTGTCACCACTTTAGCCATCAGCATCTCAGAGCACCCTCCGCCGTATACGGTGCGTGTCTCTTTAACGGTCTGCGCCAGCACACACAGAGCGTCGTGCAGCGAGCGCTCGGCCTCATCCAGGATCTGCTGCGTCGCCCCGCGCAGGACGATGGTGCAAGCTTCACCTGTGCATGGGAACACATCAGAGGTGTTTTCAGCA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU399486 True 696 TUCP 0.56 5 1504386 1507708
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000140_01186591_01191455 NA coding upstream 312342 1186398 ~ 1192044 (+)
CI01000140_01106090_01106567 NA coding upstream 397731 1106090 ~ 1106655 (+)
CI01000140_01058442_01103457 NA coding upstream 400929 1058191 ~ 1103457 (+)
CI01000140_00884663_01032654 KCNH2A, KCNH2B, KCNH2 coding upstream 471732 884663 ~ 1032654 (+)
CI01000140_00870156_00873339 KCNH2 coding upstream 631040 869928 ~ 873346 (+)
CI01000140_01536330_01540225 NA coding downstream 27561 1535269 ~ 1540380 (+)
CI01000140_01550712_01553934 NA coding downstream 43004 1550712 ~ 1554167 (+)
CI01000140_01582537_01630093 NA coding downstream 74675 1582383 ~ 1630396 (+)
CI01000140_01688652_01717386 NA coding downstream 179238 1686946 ~ 1718419 (+)
CI01000140_01807220_01815038 NA coding downstream 297991 1805699 ~ 1815769 (+)
G350835 NA non-coding upstream 46368 1456535 ~ 1458018 (+)
G350833 NA non-coding upstream 50744 1451623 ~ 1453642 (+)
G350828 NA non-coding upstream 100818 1403313 ~ 1403568 (+)
G350791 NA non-coding upstream 119927 1382030 ~ 1384459 (+)
G350802 NA non-coding upstream 182483 1321562 ~ 1321903 (+)
G350899 NA non-coding downstream 49824 1557532 ~ 1560238 (+)
G350850 NA non-coding downstream 270959 1778667 ~ 1781774 (+)
G350847 NA non-coding downstream 314068 1821776 ~ 1826782 (+)
G350830 NA non-coding downstream 400911 1908619 ~ 1969478 (+)
G350831 NA non-coding downstream 469437 1977145 ~ 1979294 (+)
G350762 NA other upstream 463578 1039556 ~ 1040808 (+)
CI01000140_00799875_00859860 SSPO, SCOSPONDIN other upstream 700680 798874 ~ 859860 (+)
G350513 NA other upstream 897405 597907 ~ 606981 (+)
CI01000140_00158111_00160851 NA other upstream 1343569 157998 ~ 160901 (+)
G350901 NA other downstream 8270 1515978 ~ 1525172 (+)
G350848 NA other downstream 61558 1569266 ~ 1576119 (+)

Expression


G350832 Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G350832 Expression in each Bioproject

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G350832 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network