Item | Value |
---|---|
gene id | G350848 |
gene name | NA |
gene type | unknown |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000140 |
NCBI id | null |
chromosome length | 2494207 |
location | 1569266 ~ 1576119 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU399506 | True | 451 | TUCP | 0.51 | 4 | 1569266 | 1576119 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000140_01550712_01553934 | NA | coding | upstream | 15099 | 1550712 ~ 1554167 (+) |
CI01000140_01536330_01540225 | NA | coding | upstream | 28886 | 1535269 ~ 1540380 (+) |
CI01000140_01186591_01191455 | NA | coding | upstream | 377222 | 1186398 ~ 1192044 (+) |
CI01000140_01106090_01106567 | NA | coding | upstream | 462611 | 1106090 ~ 1106655 (+) |
CI01000140_01058442_01103457 | NA | coding | upstream | 465809 | 1058191 ~ 1103457 (+) |
CI01000140_01582537_01630093 | NA | coding | downstream | 6264 | 1582383 ~ 1630396 (+) |
CI01000140_01688652_01717386 | NA | coding | downstream | 110827 | 1686946 ~ 1718419 (+) |
CI01000140_01807220_01815038 | NA | coding | downstream | 229580 | 1805699 ~ 1815769 (+) |
CI01000140_01885335_01887127 | NA | coding | downstream | 309139 | 1885258 ~ 1887752 (+) |
CI01000140_01948258_01949562 | NA | coding | downstream | 372139 | 1948258 ~ 1950091 (+) |
G350899 | NA | non-coding | upstream | 9028 | 1557532 ~ 1560238 (+) |
G350835 | NA | non-coding | upstream | 111248 | 1456535 ~ 1458018 (+) |
G350833 | NA | non-coding | upstream | 115624 | 1451623 ~ 1453642 (+) |
G350828 | NA | non-coding | upstream | 165698 | 1403313 ~ 1403568 (+) |
G350850 | NA | non-coding | downstream | 202548 | 1778667 ~ 1781774 (+) |
G350847 | NA | non-coding | downstream | 245657 | 1821776 ~ 1826782 (+) |
G350830 | NA | non-coding | downstream | 332500 | 1908619 ~ 1969478 (+) |
G350831 | NA | non-coding | downstream | 401026 | 1977145 ~ 1979294 (+) |
G350836 | NA | non-coding | downstream | 410337 | 1986456 ~ 1988053 (+) |
G350901 | NA | other | upstream | 44094 | 1515978 ~ 1525172 (+) |
G350832 | NA | other | upstream | 61558 | 1504386 ~ 1507708 (+) |
G350762 | NA | other | upstream | 528458 | 1039556 ~ 1040808 (+) |
CI01000140_00799875_00859860 | SSPO, SCOSPONDIN | other | upstream | 765560 | 798874 ~ 859860 (+) |