XLOC_011583


Basic Information

Item Value
gene id XLOC_011583
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 34634098 ~ 34675436 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024720
CACTAATGGCCCAGGCAGAGAGTGCAGGGCCGTGATGGGAGCCAAGTCTGGTCAGCCACACTCAGCTGGACGTCTGACTCACACTCACTTCCTGGAAGAGGCCAGCACTGAAAAGGAGGAGGATGCAGTGGGACGAAGACGCTAGCGATGATCATGCTAACTTTATCATCCGCTCCCAGCCTGGTGGCAGATGGTGCCAAGCTGCATTTGCGACATACACCAGCATTTCCCACGAGCTTGGGACCACGTGAAAGGAGAGCTTTGTCACAGGCCTCCAAATGTCAACAAGAACGACAAGAAGCTAGAGGCATGGCATGCATGGGGAGGGGGGTGAAGACTTCTGCTTAACATTTACTCATGCTAATGATTGACTTTGGTAAAGGAAATGCTTCACCAGCACAGAAAAAAAGCCTTTTTCTTTGGACTAGAAGTTCCACATatggagaaagagagaaagtaTGAGAAAAACAGCGAACAAAGCAGGGGAAAAGCACTGCTGAGGAATGTGACGCTCTTTGGTTTGAGCGGCAAGTACCCTGTGGATTTTAAATGAACTATTATAAGTGTTCCCATGGCAGCCCTGCATGGTCAACAAAAGATAAAAGTCCTACTGATGAACAACAACGAGGAAACACATGATCAAAGTGGCTTAAATCCAGATTCAGAAAAACTTTTCACGCAAGTCCAAGTAGTTGCAAAGATGAGACCTCCCATTTAAGTTTTCTCgttaaaatgacattttgtgaCTCCATGTGCAGGATGTAGGATGTATATTGCGTTCAAG

Function

GO:

id name namespace
GO:0002188 translation reinitiation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024720 True 784 lncRNA 0.46 2 34634098 34675436

Neighbor

gene id symbol gene type direction distance location
XLOC_011582 NA coding upstream 347042 34269120 ~ 34287056 (+)
XLOC_011581 eif2s1a coding upstream 379865 34244345 ~ 34254233 (+)
XLOC_011580 mpp5a coding upstream 394584 34186632 ~ 34239514 (+)
XLOC_011579 gphna coding upstream 448585 33999630 ~ 34185513 (+)
XLOC_011578 fut8a coding upstream 727610 33719415 ~ 33906488 (+)
XLOC_011584 id2a coding downstream 130461 34805897 ~ 34808165 (+)
XLOC_011585 asap2a coding downstream 421588 35097024 ~ 35223482 (+)
XLOC_011586 iah1 coding downstream 568317 35243753 ~ 35247374 (+)
XLOC_011587 CR556709.1 coding downstream 603352 35278788 ~ 35288741 (+)
XLOC_011588 cmpk2 coding downstream 687415 35362851 ~ 35375448 (+)
XLOC_011577 BX957235.1 non-coding upstream 1048636 33585346 ~ 33585462 (+)
XLOC_011569 BX323819.1 non-coding upstream 1335628 33298348 ~ 33298470 (+)
XLOC_011565 NA non-coding upstream 1512302 33120580 ~ 33121796 (+)
XLOC_011564 NA non-coding upstream 1513588 33118538 ~ 33120510 (+)
XLOC_011590 NA non-coding downstream 880876 35556312 ~ 35557562 (+)
XLOC_011591 AL929378.1 non-coding downstream 1239574 35915010 ~ 35915126 (+)
XLOC_011593 CR354585.2 non-coding downstream 1938879 36614315 ~ 36614432 (+)
XLOC_011599 CR318625.1 non-coding downstream 2596583 37272019 ~ 37272133 (+)

Expression


Co-expression Network