XLOC_011587 (CR556709.1)


Basic Information

Item Value
gene id XLOC_011587
gene name CR556709.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 35278788 ~ 35288741 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023070
AATCAACCGAAATTCACTTCCGGGCTAGGGTTGAATTTCACACCAGTGCTTCATTCGGAAAGGTTCATCCCTATGTCCTAAGCCCTGCAGAGAGTCCCTCTAAGGGAATTGAGAGCACTGGGGTGAGTCTTTCCGAATTTAACGCAGTGTGTGACACCAAACAATTCCCCTGCTCAAATGATCATGGCCCGAAGTGTCCATCAGGATTAACCTTCGGTCCGAGCCCTTCGAGAAACCCTCCAAAAGAGCCACATATGCGAAACATCCAGAAAACAGACAAGCGGCCGGATGGAGCAGCGCCGCTGCGCTCCTCCAGTCCTGTGGAGGGCGCTGTCAGTGAAGCCCCCGGCTCTCCAATACCTCCACCTAAAGCAAGCGGCAGGCTCGGTACGTCTCCTCCAGTCTCTTCAGGCCTGTCGGGATGGAGCCTACTCAGCTAGCTGTGATATTAACCCGCGGCGTGAGATGCCCACCGGTTGATGAAGAGCTCGAAGGCGGAGGAGGAAAAGAAAAACGTTTGAAGGAGATGAGCCAAATTCCTCGTTCAGGGACCACCGGTGTTGGTATGTTAGGTGGGTAAAGGGTCGTCGTCTCCTTTACTGCATTTGCACTTGCAGCACAGGACGAATGGTGTGGCAAGCAGCAGGAACGGAGAGGCCACCAGTAAGAGCAGGCCAAAACCAGCAAAGATACCAACAACCTGAGGAGAAGCAGATGAGAAGGTTTCAGAAGAAGTGTTCGAGAAGTTGAATCAAGTTAATCTTACAAGTTACTTGAACTTGCGTTACATTAAAACAACTTGAAACATGCTGAGGTAATAAGTTGAAACACAGCAAGTAAAATTTTTACAAACGTTTAGTActaacaaagactatagaatacacaagatctGTCACTTGCATACATTGTacaaaaagtctgttactttacgATGCagggaaaaaaatttaaataacggctgttaaactgtaaacatttatcgtaaaataacagacagtaaattaaagaaatttatcggaaatttaaatttaagtcaatttctttaatttactgtctgttattttacaggaaagtctgtaatttaacggccgttattttactcCAGCAGCcgggaaaaaaaaaacgtaaaataacagattttttttacagtgtagttttgaatggggaaaagtgtaatgttcaacatggcgaataaagccccgccttcaTCGATCACTATAAACTGTGGTTTTCTCCGGAGGGGAAAAGATCACACCAGACGTGtttttacgaaaaaaaaaaacacgaaacaCCTTTTTATGAAATCTCTGCAAATACTTGCTTTACAGACAcaaaaatatatccaaataaagcttgaaacctgttttgtaatctgtatgaaacgaacgcAAGGTACAGTTCACCCTGTCAagtgcacatcacatgacagcaactgcTTAAACGCCTACAAACTTGTAAATAAAGTGTTGCTGTCATTTCTGGAAGAaattcgccatcaagaccaagtttaaaattacttcagaagagcagcatgATCAGAAAATCATCATTCAGAGGAcgataatgtatgtatgtattaatgtaaccataaatgaggttggtgtcatgatctTGTTTTTTCGagcgcattagcttgggcaacctgaaaatatgctgattttgtttgattcaaatgtttagaaactaaatgtgtatatatatatatatatatatatatataaataattatctgTTCATCTTAAACCCGAATCAAGGCCCAGAATAAATGTTATCAAGGCT
>TCONS_00024721
gccgaagaaaaatgtggaaatgaatatttgaacaaaaatgaaaatgtaaacaaaacggAAAATGATGAACATGAATACAAtttaaaagaaagtaaagaggcacACACGATACAAGATTTTTATAGTTGTATTTTTTCCTCAAGATTCACATACATGCAAATTTACATACTGTACAAGTGGAATTTGGTTGTGGTTTTCAGAGAATAcaacatcaaaaacaaacaaatggcacACTGAAAAGGCCATTGAAAGAACAGTGAAAGGCAAAACCAGCTTTTAAAGCAATGGCAAAGGTCCCTAAAAATCCTAAAAGTCAAGTTAAACAAAAGGGCACGAgtcaaaacatgtaaaataacgaTTACTATGTGGAATGGGTAAACGCCAAGAGTGAAAGACAAACAAACCACTGTAGCACTTTTCGAATTCTTGCTCATAACTAAGAGCTTGCAGAAAGCTGAACCtggaaatacaaaaataaatttgcAAGGCTATTTTTTTGTGTAAGTAAACTATTACAAACAAGAACACTAGGTTTTGGCTGTTTGTGGGATCATTTACATGTAAAGCTTCAGTTGTTTCAAATTAGGTTTACTGTAGGAACAAATGGCATTTCAAACAAGCATGACGCAACCCAAATGgagacaacaaaaaacaacacttGACTGAATAAACATCCAATAATACAAATTCAATAACCCTGATGTAAGGAAATGATTATAATGTACAACAAAAATATCTTTATACAACATAAAATGAGCATCAAGTTGAGTATAACAACAAAACAGTCAAATGAAACACAATAAGCTGAATGTATACAGTAGCCCATAAAACATCAAAGATCCGCTTTGAGTACATATatcctgtcaaaataaaagttcccTCATCGATGTCTTAAAAATTTGCATGGCACAACTGTCAATATTCACATGTACATAAATATATAGAAGCTTGAACTCATATTGTTCTACATGAAATGGCCACGTGTTGCTGATTAAAATGAGTACTGGATGCCGACTGAATACactgctaaagaaaaaaaagtacatgTTTTTACGTTTTGATACTAGTCCTGCTGATTTCAGGACCAGCAAGATAACATTAAACCAGCAAGACAACattaaaccagcaagaccagcattaaaacataccttaccagcaAATGCTTACTAACTAACTTTTAGTAAGTTTACTAACTTTAGAAAGCCTAGCTTATatgtaaaaacatgtttttagccTGTTTCATGTGCTAGCATGGCTTAACATGTTGCCTCTTGtgtgtttaattattataaattaacacattttaacatgttttaacacattgatttattttttacataaatcaaCAATTTATCATTTTgctaacatgttgctagcatgtttaacaCTGTTAGCAGGAAcgaacatgtttctagcatgattaacATGGCACAATAGCCACATGTTTTAAGCATGATTAATGTTAACAGTAATTAACAAGTCAACATAAATTTAATTTAGCCtactaacatgattagcatcatAACATTTGTAATTCTCTGAACACTTCTAGCACAATGTttacatcattatcattatttatctaccatgaattaccatgttgctAAAAAATATAACCATGTTGCTAAcgcttttagcatgaattagctacTTGCTTAATTACTGGTTTACTAACTTTAGAAAGCCTAGCTTATatgtaaaacatgtttctagcctGTTTCATGTGCTAGCACGGCTTAATGGGTTGTTAGCATGCCTCTTTAATTATGATgaattaacagatttttaaacatgtttaaacactatttttacaTAAATCAACACTTTATCATTTTGTTAacttgttgctagcatgtttaacaCTGTTAGCAGGAATGAACTTGTTTCTAGCATGGCTAACATGGCACTAGCAACATATTAATGTTAACAAGAATTAACATGTCAGCATAAATCTAATTTACTGACATGATTAGCATGATAACTTTTACACACCTCTAGCACAACATTTACGTTGTTAGCATTTATCTAATTATGCTGCTAACATtttcagcatgaattagcattttttacttgcattttatcTAGCCTAATAACAGAGTGTTTTAGCAAAGTACTAGCATGAAGTGACATGCTGCGAGCATGTTTAACACTGTTTGCAGGAAtgaacatgtttctagcatggttaCATGGCACTAGTAACATGTCTCAAGCTTGATTAATGTTAACAAGTATtaacatgtaaatataaatataatttagcctactaacatgattagcatgttagcatttGTAATTTTTAGAACACTTCTAGCACAATGTTTACATCGTAGCATTTATCTACCATAAAATACCATGATGCATGATGATTAGCTATTTACTTGCATTTTATCtatcctaataaaataaaaaagtttctgTTTTAGCAAAGCATGAAGTGACATGTTGCTAGCACATTTAACTCATAATTAGCATGTAAATTAGAATGTTTCTAACATgttgaaaaaaagatttacagTTTCTTAGCTTGTCAAAGATTAGTTGCTAGGCTTCACTAGTGATAGCTAGATGAAGATCTGAAGGTGCATTAAATGCTCTAAAGGATTTATATGATCTAAAAAATATACGGCACTGTCAAGCTTGGTGATTGCAGATATAAAAGTATGACCACAAGCCAAAGCCAAATGTTCAAAATTGAGATGCACATACAAAAAATGTAGCAACATATATTTAGTTATTAGCCTACTCTATACCATGGCCATTTCACGTACAACATTTAACTGAATATAAAGCATAAACGTAGACcacaggtctcaaactcgattcctagagggccgcagctctgcacagttttgctccaactctaatcaagcacagctgatccaactaatcaaggtgttcaagactactagagactattaagcagttGAGAGTTGTTGGTGACTGAAGCTAAACCAGGGCTGCCCAACCTCAGTCATGGAAGGTCGGTCTccagcatattttagttccaacccctaaTAAACACACCTGACCTGGCTGTTCAAGCTTTTTCTAGGTATACAAAAatgtccaggcaggtgtgttgaaggaagttagagctaaacaACGCAGAGCAGCGGccttccaggacagagtttgaacACCtttgagctaaactatgcagagctgcggccctccaagaattgagtttgagaccaatgATGTAGACCTTTAAACATCACACAAAAGTGCTAACATTAGTAATCTCAAAGAACCTGAggataaatacatacaaaaaaaaaaaaaaaacaggctacaGGAGAAGAAACCAGTGAGGTGCTCAAAAACGTTAAGGCTAAAACAGGATAATAAATTCAAATGCAAACTTTTGCTaataaggcaagacactgcaggtaaaTGGGGTTTACAATTTCATTAATAGTTATCGCCATACTTCCCTGCAGTTGGTTGATTATAATTAACgcgaatagttttttttaaaatggcaagttttcaaaaatgttaaGTTGAAACATGCTAAAGTGgtattatttcattaaatttgcTAAAGGCTTAGCAAAAATATCTAAACATTGACTGTTcggttgatttgaatagtttcaTCTTTTACACAGAATCAATGGCTTTTAAAGAGGGGATATTGGCAACTCTTTTTATCAttctataattaaaaaatatcagagttatttattcaaaataatttcCCCTCCTTTTTGTACACTAAAATGTTCAATGAGATTATGTTTAAAATGAGGttaaacacaattcttaatttttttttaacaatttcactgttttatgttcaatccacttcaatttgtaaaaaacaattaagttaattgaatcaatttgtgttgggacaacattaagggACTAAgtgaatccagcatttttacagcgTATAAACTAATCCCTCTGTAAAAACTTACAGAATACAGacctaaataaaaaagttaactgTCCAAGTGCTGCTGAAGTGGTGATTTTTGGAAAAATCCTTTTAAGACAACAGATTTTAAACATCTGTATCATAATTAAAATCACAAATTTAAAAGTGcaaaatgtattttgtgttttcttttcattAGACTAAAAACACTATGGAAAGCCAAAAAGAtttttttgcctgcagtgtctcaccttaaaacatttaaactaggATCTTAACTGTACACTTGAGCCAAAAAGTCAACTCAAGACCATTTAAAGTGACCAAAAAAGCCCCTTATTTGTGCAAAACAAATAACAAAGACCAGGCTGTGTGACTGAAATGCTACTATTCACATAGAAAACAGACAAACACCACACTGAAAATATTTTCTGCATAACAGAAACCCTCCAAAAGAGCCACATATGCGAAACATCCAGAAAACAGACAAGCGGCCGGATGGAGCAGCGCCGCTGCGCTCCTCCAGTCCTGTGGAGGGCGCTGTCAGTGAAGCCCCCGGCTCTCCAATACCTCCACCTAAAGCAAGCGGCAGGCTCGGTACGTCTCCTCCAGTCTCTTCAGGCCTGTCGGGATGGAGCCTACTCAGCTAGCTGTGATATTAACCCGCGGCGTGAGATGCCCACCGGTTGATGAAGAGCTCGAAGGCGGAGGAGGAAAAGAAAAACGTTTGAAGGAGATGAGCCAAATTCCTCGTTCAGGGACCACCGGTGTTGGTATGTTAGGTGGGTAAAGGGTCGTCGTCTCCTTTACTGCATTTGCACTTGCAGCACAGGACGAATGGTGTGGCAAGCAGCAGGAACGGAGAGGCCACCAGTAAGAGCAGGCCAAAACCAGCAAAGATACCAACAACCTGAGGAGAAGCAGATGAGAAGGTTTCAGAAGAAGTGTTCGAGAAGTTGAATCAAGTTAATCTTACAAGTTACTTGAACTTGCGTTACATTAAAACAACTTGAAACATGCTGAGGTAATAAGTTGAAACACAGCAAGTAAAATTTTTACAAACGTTTAGTActaacaaagactatagaatacacaagatctGTCACTTGCATACATTGTacaaaaagtctgttactttacgATGCagggaaaaaaatttaaataacggctgttaaactgtaaacatttatcgtaaaataacagacagtaaattaaagaaatttatcggaaatttaaatttaagtcaatttctttaatttactgtctgttattttacaggaaagtctgtaatttaacggccgttattttactcCAGCAGCcgggaaaaaaaaaacgtaaaataacagattttttttacagtgtagttttgaatggggaaaagtgtaatgttcaacatggcgaataaagccccgccttcaTCGATCACTATAAACTGTGGTTTTCTCCGGAGGGGAAAAGATCACACCAGACGTGtttttacgaaaaaaaaaaacacgaaacaCCTTTTTATGAAATCTCTGCAAATACTTGCTTTACAGACAcaaaaatatatccaaataaagcttgaaacctgttttgtaatctgtatgaaacgaacgcAAGGTACAGTTCACCCTGTCAagtgcacatcacatgacagcaactgcTTAAACGCCTACAAACTTGTAAATAAAGTGTTGCTGTCATTTCTGGAAGAaattcgccatcaagaccaagtttaaaattacttcagaagagcagcatgATCAGAAAATCATCATTCAGAGGAcgataatgtatgtatgtattaatgtaaccataaatgaggttggtgtcatgatctTGTTTTTTCGagcgcattagcttgggcaacctgaaaatatgctgattttgtttgattcaaatgtttagaaactaaatgtgtatatatatatatatatatatatatataaataattatctgTTCATCTTAAACCCGAATCAAGGCCCAGAATAAATGTTATCAAGGCT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0003365 establishment of cell polarity involved in ameboidal cell migration biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:0009790 embryo development biological_process
GO:0043296 apical junction complex cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0070160 tight junction cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097654

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023070 False 1779 lncRNA 0.41 2 35278788 35288741
TCONS_00024721 True 5875 lncRNA 0.35 2 35281526 35288741

Neighbor

gene id symbol gene type direction distance location
XLOC_011586 iah1 coding upstream 31414 35243753 ~ 35247374 (+)
XLOC_011585 asap2a coding upstream 55306 35097024 ~ 35223482 (+)
XLOC_011584 id2a coding upstream 470623 34805897 ~ 34808165 (+)
XLOC_011583 NA coding upstream 603352 34634098 ~ 34675436 (+)
XLOC_011582 NA coding upstream 991732 34269120 ~ 34287056 (+)
XLOC_011588 cmpk2 coding downstream 74110 35362851 ~ 35375448 (+)
XLOC_011589 BX571665.1 coding downstream 142983 35431724 ~ 35437222 (+)
XLOC_011590 NA coding downstream 267571 35556312 ~ 35557562 (+)
XLOC_011591 AL929378.1 coding downstream 626269 35915010 ~ 35915126 (+)
XLOC_011592 htr1b coding downstream 1299540 36588281 ~ 36589605 (+)
XLOC_011577 BX957235.1 non-coding upstream 1693326 33585346 ~ 33585462 (+)
XLOC_011569 BX323819.1 non-coding upstream 1980318 33298348 ~ 33298470 (+)
XLOC_011565 NA non-coding upstream 2156992 33120580 ~ 33121796 (+)
XLOC_011593 CR354585.2 non-coding downstream 1325574 36614315 ~ 36614432 (+)
XLOC_011599 CR318625.1 non-coding downstream 1983278 37272019 ~ 37272133 (+)
XLOC_011601 NA non-coding downstream 2091759 37380500 ~ 37398410 (+)

Expression


Co-expression Network