XLOC_011601


Basic Information

Item Value
gene id XLOC_011601
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37380500 ~ 37398410 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024723
cacagattaattgtttacCTCAAAAGGGCCAAGTCTAAAATGAATAGTATTATCAGTTTAACAAGATCAGACTTTAAAACATGTCCGTTTCTCAGTTTGATTATGCTCATCATGGTTTAAAATCTGCACACAGGAGTTTCACTACTGATATTACATGCGTTACAACCGACAGATAGCCTTAATTTAGTCACAGATATCCTTCCTGTGCAGGAAAGCGTCAAATGAGAGGGCGGAACCCACACAGCTGCAAGATCTCAGTTATAGATGGCTTAAAAATAGACACATTTCATCAAGTCTGCGCGCTCAATGGCTCTTTctttgaacaaaatattttaaatagcgAAGCCGGGGAACAACCCTTTCTGTCGGTCTCATTCTCTCACTGCAGATCTCACCACGATAAAGACTCTTTGTTCAATGGCAAACGCTGAAGAGAGAGTGGTGCCGAGGGCTGGCCGAGTCACTGTTGGGTTTTGTTTGTGTCTGTTACCATCGCGACCGTTGTCCTCTGACCCGCCAGCAGACGCTCTGTACTGGATGGGGCGTAGTGCACTTTTTAACAGGCACAGGGTGGAAGAAGTGGCACTCCCTTTTCACCTCGAAACAGAAaagaagctcaaacaggtttggagcaagtggaggATCATCCATCAGCAAGTTCTAAACTCTAGTGCCACCCATGTTTACCAAGTCGTGCCCGGCCACTGTTTCATCTCAACTGGTAACAGACAGCCCAGCCCACCCGCTGTTTCATGTCCTCATGGGCTCTTCCCAAATGCAGACACCATGAGGTTCACCATCAAGGCTTTTCCAGCGATCTTCATTTCCTCCCTCTGTTGACAGTAGATCCCGCAGTCCACGCTGAGAGATCATTTTCTTGCCAGCCTCTTCCAGCTCTGTTATCATTGTCTGTGTACCATTACTAAAAGTGTTATCTTATCTGAGCACCCGCATCGCTCACTTCCGTGGTTTGTTTTTGAAACGACGAGTATTAATATTAtgctttga
>TCONS_00024724
GTGATATTGAATATAATAGCCAGAGCTGTGTACCTGAAATGAATAGTTACAGCTTGCTCTTTCACAGATATGAAGATCATCCATCAGCAAGTTCTAAACTCTAGTGCCACCCATGTTTACCAAGTCGTGCCCGGCCACTGTTTCATCTCAACTGGTAACAGACAGCCCAGCCCACCCGCTGTTTCATGTCCTCATGGGCTCTTCCCAAATGCAGACACCATGAGGTTCACCATCAAGGCTTTTCCAGCGATCTTCATTTCCTCCCTCTGTTGACAGTAGATCCCGCAGTCCACGCTGAGAGATCATTTTCTTGCCAGCCTCTTCCAGCTCTGTTATCATTGTCTGTGTACCATTACTAAAAGTGTTATCTTATCTGAGCACCCGCATCGCTCACTTCCGTGGTTTGTTTTTGAAACGACGAGTATTAATATTAtgctttga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024723 False 1008 lncRNA 0.45 3 37380500 37398410
TCONS_00024724 True 441 lncRNA 0.45 3 37395841 37398410

Neighbor

gene id symbol gene type direction distance location
XLOC_011600 elmsan1b coding upstream 14832 37301860 ~ 37365668 (+)
XLOC_011598 tmem62 coding upstream 99187 37253706 ~ 37281313 (+)
XLOC_011599 CR318625.1 coding upstream 108367 37272019 ~ 37272133 (+)
XLOC_011597 CR318625.2 coding upstream 126234 37249736 ~ 37254266 (+)
XLOC_011596 hadhab coding upstream 127690 37227936 ~ 37252810 (+)
XLOC_011602 AL929543.1 coding downstream 55266 37453676 ~ 37453807 (+)
XLOC_011603 mta1 coding downstream 112398 37510808 ~ 37618891 (+)
XLOC_011604 tmem229b coding downstream 226294 37624704 ~ 37649828 (+)
XLOC_011605 NA coding downstream 267241 37665651 ~ 37668524 (+)
XLOC_011606 NA coding downstream 502021 37900431 ~ 37922022 (+)
XLOC_011593 CR354585.2 non-coding upstream 766068 36614315 ~ 36614432 (+)
XLOC_011591 AL929378.1 non-coding upstream 1465374 35915010 ~ 35915126 (+)
XLOC_011590 NA non-coding upstream 1822938 35556312 ~ 35557562 (+)
XLOC_011587 CR556709.1 non-coding upstream 2091759 35278788 ~ 35288741 (+)
XLOC_011609 NA non-coding downstream 849638 38248048 ~ 38253066 (+)
XLOC_011617 NA non-coding downstream 1266631 38665041 ~ 38665459 (+)

Expression


Co-expression Network