XLOC_011603 (mta1)


Basic Information

Item Value
gene id XLOC_011603
gene name mta1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37510808 ~ 37618891 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023088
GCGCGCTCCAGCTCCGTGGCCCGACTCTGTGCTCTGCTCCGGAGTGAAGGATCCCGCTTTGTTGAGAAGGTGTTCCAAAACACGCGGGCGAATCCGAACGCGAACACGCACACCGGCCCGTGGAACGCGGCTTCATCAAAATATgtgcactgtctctttaagatcCCTTCTCTGGTCCGCTTCGTATTGATCAATCCACCATTTTCCAGCGCACAGCACTGAGCGGCGGCGGCAGAGAGAGAAAGCCCTACCTGGAGACGCCAGGCAGGACCGGGGGCAGAGTCATGGCAGCCAACATGTACCGGGTCGGAGATTATGTTTATTTCGAAAACTCCTCCAGTAACCCACTGCTGATCAGGCGAATAGAGGAACTCAACAAGACGGCGAATGGGAACGTGGAGGCCAAAGTGGTGTGTTTCTACCGCCGCAGAGACATTTCCGCAACACTCATCGCCCTCGCTGACAAACATGCACGTGAGTAGCTGTCAGAGACCACTTTGAACACAATGCTTATCGCTGCCAATGACTGAATACCCATTTGAATGTACTTTTGGAACACTTCAAAAATTGGTTTTGACCATAATTTGCTAGgcatatgtttgtttgaatgcTAGATTGAGCATGTATTGAATTAAAGCAGATTGAAATGGTAACGGATTGTTTTAAGCATTCAGACAAACATCGTTTTTAGTAAAATGGATATCTGAATTGTCAATATCAACATCAATTC
>TCONS_00023089
CTGTGCTCTGCTCCGGAGTGAAGGATCCCGCTTTGTTGAGAAGGTGTTCCAAAACACGCGGGCGAATCCGAACGCGAACACGCACACCGGCCCGTGGAACGCGGCTTCATCAAAATATgtgcactgtctctttaagatcCCTTCTCTGGTCCGCTTCGTATTGATCAATCCACCATTTTCCAGCGCACAGCACTGAGCGGCGGCGGCAGAGAGAGAAAGCCCTACCTGGAGACGCCAGGCAGGACCGGGGGCAGAGTCATGGCAGCCAACATGTACCGGGTCGGAGATTATGTTTATTTCGAAAACTCCTCCAGTAACCCACTGCTGATCAGGCGAATAGAGGAACTCAACAAGACGGCGAATGGGAACGTGGAGGCCAAAGTGGTGTGTTTCTACCGCCGCAGAGACATTTCCGCAACACTCATCGCCCTCGCTGACAAACATGCACGAGAGATGGAAGAGGAGATGGAGAACCCTGAGATGGTGGATCTCCCAGAGAAGCAGAAGCATCAGCTGAGACACAGAGAACTCTTTCTCTCCAGACAGTTGGAATCTCTGCCCGCGACACACATCAGGGGGAAATGCTGTGTTACTCTTCTGAATGAGACGGAAGCCCTCAAATCCTATTTAGACAGAGAGGATGCCTTTTTCTACTCGCTGGTGTACGACCCACAGCAAAAGACTCTGCTGGCTGATAAGGGAGAGATCAGAGTGGGAAACAAGTACCAGGCTGACATCACTGACCTCCTCAAAGAGGGAGAGGAGGATGATCGGGAGCTGGAGAAACTGGAGGAGAAGGTGTGGGATCCCAGCAACCCCCTCACCGAGAAACAGATCGACCAGTTCCTCGTCGTGGCTCGGTCTGTGGGCACGTTTGCGCGGGCTCTAGACTGCAGCAGTTCAGTTCGGCAGCCCAGTCTGCACATGAGCGCTGCAGCAGCCTCCAGAGATATCACACTGTTTCACGCCATGGACACGTTGCATAAGAACGGCTACGATATGACGCGGGCCATCGCAGCGCTGGTACCTCAGGGCGGACCTGTGCTCTGCCGGGACGAAATGGAGGAATGGAGTGCATCCGAAGCTAACCTATTTGAAGAAGCGCTGGAGAAATACGGCAAAGACTTCACTGATATTCAGCAGGACTTTCTTCCGTGGAAGTCTCTGACCAGCATCATTGAATATTACTACATGTGGAAGACCACAGACAGATACGTTCAGCAGAAACGATTAAAAGCAGCTGAAGCGGAGAGCAAGTTAAAGCAGGTTTACATCCCAAATTAcaACAAGCCCAATCCTAACCAGCTGAGTGTGAACAGTGTTAAGCCTGGGCTGGTGAATGGAGCGGGGGCTCTTCCGGGAGCTCCAGGACAGCCGGTCGGATTGGGGCGAGCTTGCGAGAGCTGCTACAccaCCAGCTCGTATCAGTGGTACTCGTGGGGTCCTCCCAACATGCAGTGCCGACTCTGTGCCTCCTGCTGGACCTACTGGAAAAAGTACGGAGGTCTGAAGATGCCAACCAGACTAGATGGAGAGCGGCCCGGACCCAACCGCAACAACATGAGTCCTCACGGTTTGCCCGTGAGACACAGCGGAAGCCCCAAGTTTGCCGTTAAGACCAGGCAGGCTTTCTACCTGCACACGTCTCAGATGACGAAAGCCGCTCGACGCGTCTGCCAGGACCTGCTGAGATCCAAATACTTGGCCAGACACCCGTACACACCTGTCAACACCATCGCTATCAAAGCTGAGTGTGCTGTGCGGTTGCCAGATATGTCCAAAAAACCTGCATCTCTAAAGCAGACAGTAAGGAAGCCTTTAGAGTCTGTGGTTAGATATCTCGAGGCGCACCCTCTCCCGCCCAAAGCAGACCCTCCACGAGGAGTCACCATTTCCACAGGCAGCCTGACGCCCATTAAATCCACACCCATCCTCAACAACGGCTCGCCGACCATCCTGGGCAAGCGCAACTACGAGCAGCACAACGGCTTGGATGGGTCCAAACCCAAAGTCCTGGCTCCTCAGTGGGAGATAATGGCCAAGAGGATGTCTGAAGCTGGCCGGACTCCCTCTGTCCTGCAGGATGAGGTTCACGAACTAGACTGACCTCTGCTTTGACATTTGACTGCTATACTCCAACCAGATGAGCAGcTCTCAGTGACGGATGGACCTAAGAAAACATCTGCGGTCAGAATGCCCTGTCTGAGAGgcccattttcttttttttttttgttttttttttttttacagctgaaGCCATTGTAAAGACTGCAACGCCCTGACGTCTCCATGGGTTTTCAACAGCCTGTGGACATTCACAGGACTGACCTGATTGTACAGGACtgattattactactactattattattattattataattattattattgtttaccaTCGGCTGTTACTTCTgtcattgtaattattattataattattacaattattattactgCTCTCTTTTTTTATCAAGTATAACCATTTTCTTTATAATGACTTGAGAAAATGTATGAATCTTGAACGTTTCTTGAAATGGCTTGCGCCCATAGTGTATAGGTGGGACAagctgctgttattattattattattatgattttttttgtctcttgCGTTGTTTTGTAACATGTCAGCTCTGTGCCGACGTGAAGGACTTTATGACTTCAGTGTCTCGCCGTTTGGATGCTTGTATTCGCCGGTTCTGTTGGCCCCGTCCTGCCTCAGCGGTTTAAATTATTCAGAAAGACAACAGAACGTTCTTTTTCTACCTTTTTCACAAGTATTGCGACTGCTTCTATATGTAATTTCTCTTTTGTGAATATGTAAATGAAAACAGGAGGGGAGGCGTTATTGTACAGTGGTGCATTTTGGGCCTTCGGCGGATATCAAAGCTTGTTGTAATGGATTTGCCATGCACAGCGCATTCtttgaaatgtctttttttgtaaGGAAACCTCCCAACGCTCTCTCTTGCATATACGGAGGGGCGGCGGGAACTCTGAAAAGGTACTACTCCATTAATACAATGATGCACCTTCTCAAGAATGA
>TCONS_00023090
CAGCACTGAGCGGCGGCGGCAGAGAGAGAAAGCCCTACCTGGAGACGCCAGGCAGGACCGGGGGCAGAGTCATGGCAGCCAACATGTACCGGGTCGGAGATTATGTTTATTTCGAAAACTCCTCCAGTAACCCACTGCTGATCAGGCGAATAGAGGAACTCAACAAGACGGCGAATGGGAACGTGGAGGCCAAAGTGGTGTGTTTCTACCGCCGCAGAGACATTTCCGCAACACTCATCGCCCTCGCTGACAAACATGCACGAGAGATGGAAGAGGAGATGGAGAACCCTGAGATGGTGGATCTCCCAGAGAAGCAGAAGCATCAGCTGAGACACAGAGAACTCTTTCTCTCCAGACAGTTGGAATCTCTGCCCGCGACACACATCAGGTAACCTATGAAAAAATCTTTAGATATTGAGGATATGCTTCATTCTGGCagcgtttttttttcttctagcaGCCGACTTACTTTCATTAGTGCGAGCATaggagtctcacacacacacaacgactcccttcagtcttttttttttttcatgttctgGCCTAATGGAATCCCCAGTGCGGAAGAGTATTAACCTCTCGTTCATTCACGCCGCTCTCTCATCGGTGCGATTTCAGCAGAGAGCAGTTCAAGATTGAGTCAGTCTTGTTTTTTTGCTCAAGGGCTTGTATTTTTCGTCATCTGTACTTGTGAATAGAACCATTTAAGAAGAATCATGTCCTCTTCTATTTCGGATGTTGCTATGAAAgcagatggatttttttttt
>TCONS_00023091
ATGGCAGCCAACATGTACCGGGTCGGAGATTATGTTTATTTCGAAAACTCCTCCAGTAACCCACTGCTGATCAGGCGAATAGAGGAACTCAACAAGACGGCGAATGGGAACGTGGAGGCCAAAGTGGTGTGTTTCTACCGCCGCAGAGACATTTCCGCAACACTCATCGCCCTCGCTGACAAACATGCACGAGAGATGGAAGAGGAGATGGAGAACCCTGAGATGGTGGATCTCCCAGAGAAGCAGAAGCATCAGCTGAGACACAGAGAACTCTTTCTCTCCAGACAGTTGGAATCTCTGCCCGCGACACACATCAGGGGGAAATGCTGTGTTACTCTTCTGAATGAGACGGAAGCCCTCAAATCCTATTTAGACAGAGAGGATGCCTTTTTCTACTCGCTGGTGTACGACCCACAGCAAAAGACTCTGCTGGCTGATAAGGGAGAGATCAGAGTGGGAAACAAGTACCAGGCTGACATCACTGACCTCCTCAAAGAGGGAGAGGAGGATGATCGGGAGCTGGAGAAACTGGAGGAGAAGGTGTGGGATCCCAGCAACCCCCTCACCGAGAAACAGATCGACCAGTTCCTCGTCGTGGCTCGGTCTGTGGGCACGTTTGCGCGGGCTCTAGACTGCAGCAGTTCAGTTCGGCAGCCCAGTCTGCACATGAGCGCTGCAGCAGCCTCCAGAGATATCACACTGTTTCACGCCATGGACACGTTGCATAAGAACGGCTACGATATGACGCGGGCCATCGCAGCGCTGGTACCTCAGGGCGGACCTGTGCTCTGCCGGGACGAAATGGAGGAATGGAGTGCATCCGAAGCTAACCTATTTGAAGAAGCGCTGGAGAAATACGGCAAAGACTTCACTGATATTCAGCAGGACTTTCTTCCGTGGAAGTCTCTGACCAGCATCATTGAATATTACTACATGTGGAAGACCACAGACAGATACGTTCAGCAGAAACGATTAAAAGCAGCTGAAGCGGAGAGCAAGTTAAAGCAGGTTTACATCCCAAATTAcaACAAGCCCAATCCTAACCAGCTGAGTGTGAACAGTGTTAAGCCTGGGCTGGTGAATGGAGCGGGGGCTCTTCCGGGAGCTCCAGGACAGCCGGTCGGATTGGGGCGAGCTTGCGAGAGCTGCTACAGTGAGTccaCCAGCTCGTATCAGTGGTACTCGTGGGGTCCTCCCAACATGCAGTGCCGACTCTGTGCCTCCTGCTGGACCTACTGGAAAAAGTACGGAGGTCTGAAGATGCCAACCAGACTAGATGGAGAGCGGCCCGGACCCAACCGCAACAACATGAGTCCTCACGGTTTGCCCGTGAGACACAGCGGAAGCCCCAAGTTTGCCGTTAAGACCAGGCAGGCTTTCTACCTGCACACGTCTCAGATGACGAAAGCCGCTCGACGCGTCTGCCAGGACCTGCTGAGATCCAAATACTTGGCCAGACACCCGTACACACCTGTCAACACCATCGCTATCAAAGCTGAGTGTGCTGTGCGGTTGCCAGATATGTCCAAAAAACCTGCATCTCTAAAGCAGACAGTAAGGAAGCCTTTAGAGTCTGTGGTTAGATATCTCGAGGCGCACCCTCTCCCGCCCAAAGCAGACCCTCCACGAGGAGTCACCATTTCCACAGGCAGCCTGACGCCCATTAAATCCACACCCATCCTCAACAACGGCTCGCCGACCATCCTGGGCAAGCGCAACTACGAGCAGCACAACGGCTTGGATGGGTCCAAACCCAAAGTCCTGGCTCCTCAGTGGGAGATAATGGCCAAGAGGATGTCTGAAGCTGGCCGGACTCCCTCTGTCCTGCAGGATGAGGTTCACGAACTAGACTGACCTCTGCTTTGACATTTGACTGCTATACTCCAACCAGATGAGCAG

Function

symbol description
mta1 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Predicted to be involved in several processes, including histone deacetylation; negative regulation of transcription by RNA polymerase II; and response to ionizing radiation. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA1 (metastasis associated 1).

GO:

id name namespace
GO:0043543 protein acylation biological_process
GO:0006302 double-strand break repair biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0018393 internal peptidyl-lysine acetylation biological_process
GO:0018394 peptidyl-lysine acetylation biological_process
GO:0006325 chromatin organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0006473 protein acetylation biological_process
GO:0006475 internal protein amino acid acetylation biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0016573 histone acetylation biological_process
GO:0016575 histone deacetylation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0061695 transferase complex, transferring phosphorus-containing groups cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0055029 nuclear DNA-directed RNA polymerase complex cellular_component
GO:0000428 DNA-directed RNA polymerase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0016581 NuRD complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005669 transcription factor TFIID complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0030880 RNA polymerase complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0042826 histone deacetylase binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0140223 general transcription initiation factor activity molecular_function
GO:0001103 RNA polymerase II repressing transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-353 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Predicted to be involved in several processes, including histone deacetylation; negative regulation of transcription by RNA polymerase II; and response to ionizing radiation. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA1 (metastasis associated 1).

Ensembl:

ensembl_id ENSDARG00000007198

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023088 False 730 lncRNA 0.48 3 37510808 37549455
TCONS_00023089 False 3046 mRNA 0.50 18 37510834 37618891
TCONS_00023090 False 771 lncRNA 0.47 4 37511021 37571301
TCONS_00023091 True 1899 mRNA 0.54 17 37511092 37615881

Neighbor

gene id symbol gene type direction distance location
XLOC_011602 AL929543.1 coding upstream 57001 37453676 ~ 37453807 (+)
XLOC_011601 NA coding upstream 112398 37380500 ~ 37398410 (+)
XLOC_011600 elmsan1b coding upstream 145140 37301860 ~ 37365668 (+)
XLOC_011598 tmem62 coding upstream 229495 37253706 ~ 37281313 (+)
XLOC_011599 CR318625.1 coding upstream 238675 37272019 ~ 37272133 (+)
XLOC_011604 tmem229b coding downstream 5813 37624704 ~ 37649828 (+)
XLOC_011605 NA coding downstream 46760 37665651 ~ 37668524 (+)
XLOC_011606 NA coding downstream 281540 37900431 ~ 37922022 (+)
XLOC_011607 plekhh1 coding downstream 313542 37932433 ~ 38023273 (+)
XLOC_011608 slc25a21 coding downstream 411436 38030327 ~ 38233021 (+)
XLOC_011593 CR354585.2 non-coding upstream 896376 36614315 ~ 36614432 (+)
XLOC_011591 AL929378.1 non-coding upstream 1595682 35915010 ~ 35915126 (+)
XLOC_011609 NA non-coding downstream 629157 38248048 ~ 38253066 (+)
XLOC_011617 NA non-coding downstream 1046150 38665041 ~ 38665459 (+)
XLOC_011619 NA non-coding downstream 1160090 38778981 ~ 38782957 (+)

Expression


Co-expression Network