XLOC_011616 (ccdc88c)


Basic Information

Item Value
gene id XLOC_011616
gene name ccdc88c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 38602602 ~ 38716245 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023108
taaatgtttactttaagtaGCATTGAAACCCGTACATTTCCAAAAAATGAGGGTAAATGACTAAAATTCCTAATAAacagagttatttaaaaaaaaaaacatgctttacCTCCTGAGGGTGCCATCGAGCTGCACCGCGGAGGTCTCTTTGGTTGTCGCGACAACACTTTGCCCGGTCGGTTACGTCATTTGAATGAAACCCAGTACACACGAGTCAGATATTGGTCGTTTACTGCCTCCCACCGGTGGAGACGCGGTAGCTGATTGGCTGTCGAGCATGTCACTCGACTGTGCTCTTCATGCTGGTACAGGTTGAATGCACGGTGGTGGTAAAGTAACTCTAGCAAGCATTGAGGGTAAACGTAGAGAACTTTAAGTTTGATAGGACAAGTCAGCGTAGACGGTATTCCTAATGTATCTGCAACGTTTCACTTTTGGAATTGCAAATAGTTTAAAAGTTGTTTAAACTATTACCACGGGGGATGTTTTTTTATTACCAGAATGGAGTTGGTTCGCGTCTCCTGCATTGTTCTACGGTGGAAAGAATTGTGGAGTACATGAACCCCTAGAAGAATCCGACgcactttgttttttatttatttatgtggacGCACTTTCAGTTGCAAACAGTTTGAACTCTTTTAAGTGTGTGTTATTCATCTCAAAATGGATATTACAGTGTCTGAACTGATGAGTAACTTCATGGATTCGCCGCTTGTGGTTTGGgttAAAACTTTTGGACCTCTTGGGTTCAGTTCAGAAGACAAGCTCTCCATGTTCATGGATTTAGTGGATGGTGTTTTCCTCCATAAGATAATGACACACATAGACCCAAGCCCCATGAATCAGCGAGTGAACAAACAAGTCAACAATGATGTTAACCTGAGAATACAGAACCTCAATACTGTCATCCGACACATTAAAAATTACTACCAGgAGCATCTTCAGCAGCTCATCGTTATGAACCTGCCCAATGTGTTGGCCATCGCCAAGGACCCTTTATCAGGTAAAAGCATGGAGGAGATGAAACGAATGCTGTTGCTGATACTGGGCTGCGCTGTTCAGTGTGATCGCAAAGAAGAAATCATTGAGAAGATCAAGCTGCTTGATATTGAGACACAGGCTGCAATTGTGACGCATATTCAAGAGGTAACGCACAATCAGGAGAATGTTCTGGACCTGCAGTGGATGGAGGTTGCAGAGATCCCTGCTGAGCAGTTGGATCCTCTGTCTCGAACCATGGCCTTTCACTTACGCAAACTCATAGATGAGCGAGATGAGTCTGCTGAGCTGGTCATAGAGTTGACCCAGGAGAGGGACTATCTTCAGTCTCAGCAGCCTTCAGGTCTTTTGGGCTTTCCTAGCCCTGAGCGCACGTCCCTTTCTCCCATCACCCTGCTGTCTAAAGAAGATCGTCAGCATTTAGCCGTGGAGCTGGCTGACACAAAGGCCAAACTGCGGCGCTCCCGGCAGGAATTGGAAGAGAAGACTGAGCAGTTAATTGATGCCAAGAATGAGATCGAGCGCTTGGATTCTGATATTCAGAAGCTCAAACAGGAGAACACACAGTTGCTGGCAGAGGCACGTTCAGTGCGAGCATACCGGGATGAGGTTGATTCTCTAAGGGAGCGTGCTGGAAAAGTGGATCGCTTGGAAACCGAACTGTCTCGCTTCAAAGAGAAGCTAAATGATGTCCATTTCTACAAGACGCGCATAGAGGAGCTAAGAGAGGACAATTTGACTCTGCTGGAGACAAAGTCCATGCTGGAAGAGCAGCTTACTGGAGCCAGAGGGCGCTGTGACAAACTACACGAACTGGAGAAAGAGAACCTTCAGCTGCGCTCCAAACTGCATGATATAGAAATTGACAGGGACAGTGATAAGAAACGTCTGGAAGAGCTGCTGGAGGAGAACATGTTGCTGGAGATCTCTCAGAAACAAAGTATGAACGAGTCTGCTCACCTTGGCTGGGAACTGGAGCAACTAGCCAAGAACAATGAGGTCAATGAAGCCCGTAAGTCATTTGTGTTTGAGCTGAACGAGTCCGCATCCAGCCGACTGTTGAAGCTTGAGAAGGAAAACCAGTGCCTTCAGAGCACCATTCAGGAACTGAGAGAGGCCTCCATCAACATGGAGGAAGGTCAGCTGCATTCACTGGAGCTGGAGAAAGAGAACCAAAGCCTCAGCAAGAAGTTGGAGCGTCTGCAGTCCCAGTTGGACCAGGAGAAACAGACAACTCAGGACATGGAGAACCTTGGAGAGGAGCTAATAAAAGAGAAACAGAGAATGGAGAAAACTTTGGAGACAATCCAGGCAGAGAAAGATAGACAGATCTCAGAGTTGGAACAGGAGAAGGAGCACCTGACCCAGGCCGTGAGCTCCCTCCGGAAGCGGGCTCAGGCAAACAGCGAGGCCCGAGTGAGGGAGGTGGAAACAGAAAACCGCATTCTGCATCAGACTATCTCTGAAACGGGTGGTAAACTAGCTCGTCTGGAAGCTGAGAAACGTCAAGTGACTAAAGAGCTGGAATCTCTCCGCGAAAGAGGAGAGCGATGCGAGGAGTTGGAAAGGGAAGTTCCTCGTCTAGAGAGAGTCCGGGAGCAGCTACAACGGGAAGCAGCAGCCTTGAAGATCGGAAGCGAGCGTGCCGAAGCCTTGGAGCGGGAGAATGCCACTCTGGAGCAAGACAATCGCAGACTCAAGAAGTTGGCCGACACTGCACAGAATGCCACCCTGCGTCTGGCTGTTTTAGAGAAGGATCACCAGCAACTTGAGGAGGAGAACTTGGAGCAGCGTCGTGCATTGGAGACCCTCCGTCCAGCAGCTGCACGCTTGGCTCAATTACAGCAGGAACATGCAGAGCTGGAGCGAGAACACGAGGAGATGTGCCGCACGATGGAAGAGCTGCGTTCTCAGGCTAAGAGGAGTGAAAGACTAGAGAAGAGCTGTGGAAGCCTGAGTCTAGAGAACCAACGGCTGCAACAGACTCTGGAGAACAGCTCCACCAAAATGCAAGGTCTAGAAAGTGAACTGAGGCAGAATGAGGCAGAAATGAAGGATCTGCAGCGAGAATTAGAGGGTTTGAGGCAGAAGGTGACGTGGGCTGAAACGTTGGAGAAGGAGAATCGAGGAATGGAGCAGGAATTGAGCCAGCTAGAGAAGGAGAAAAAGCAGCTGGAGAAGGAGGCGCGGAGGTTCAGGCAGCAGTTGGAGGTGAAGGAGGCGGCGCTGGAAGAGAATTGTCTTAGGCTAGCCAGCATGGAGAAGGAAGGCACAGCTCTCAGTAAAGAGTTAGGCCGAGTTAAAGAGGCTGCAGGAAGACTCAAAGAGTTGGAGAGAGAGAACAAAGACCTGCAGAAACAGGCCACCATGGATAAGAAGACTCTTGCCACACTTAGAGAGGAGCTGGTGAATGAAAAGCTGAGGGTGCAGCAGCAGTGTAATGAACTGGAGAAGCTGAGTCACGAGCTGGAGAAGATCGGCCTaaacagagaaaaactcctgcagGAAGAGCACAGCTGTGAAGACAATAAATATAAGATCCTGGAGACCAAGATCGAGTCAGCACTGAAGAAAACTCTGGAGCTCAGAGAAGAGAAGATCCAGAGCCTGGAGTCTCGGCTGGAGGAGAGCagcagcttaaaccagcaactACGCACCGAACTCACCACTGTAAAGAAGAATCTGGAAGCCCTCAAGCAAAGGCATGAAGAAGAAGCAGCCCATTCTGAGATCTCCCAGCAGACTTTGGGACAGACTAGATCACTCCCAGATAAAGAGAAGTGGGAGATGGAGCAGAGGGAGGCCACGGCTGAACTGCTCAAGCTCAAAGACAGACTGATCGATGTTGAGAAGAATGTAAGGCAACGGCATGTTTCTATTGACATACACAGGGTCATCTTCAGTATTGTAATCTGCTTTTGTGATTCTCTCCAGAATGCTGCTCTACAGACAGAGAAATATCTTCTGAAGGATCAGTTGAAGCAAATTGATTCTCAAAACGCACAGCTCAACGCACAAACACTAGCGCTGCAGAAACAGGCAGCATCCCTACAAGAACACAACACGTCTCTCCATAAAGAAACAGCTAAACTCCAGGTGGAAAACTCGACTCTAAGCTCTCAGAGCTCCTCTCTCATGGCTCAGTATGGAGCTTTACAGGCTCAGCTGCAGACTCTGGAGTCGGAGGCCGAGTCTCTGCAGAAACAGCGAGAGGAGGCGAGTGCGGCCCGTGATCGAGTCACACAGGACCATGAGCGTCTGTTAGGTGTGCATGAACGCCAGGCGTCCGAGTACGAGCAGCTCATTGCTCAACATGCAGCACTAAAGGCCAGCCAGAGAGCTCTGGAGCAAGAAAACCGCACACTGGAGAACAAGTATATGGTTCTTCTGAAGCAGAAGGACGCTATGGAGGCACTGGAGGAATCTTTGCAAAGGGACAGAGAAAGTCTAGGAGAGGAAATTCGCAAAAACACACTTATCCTGGGAGAGAATCGCAGTCTGAGGGAAGAAGTAGACAGAgtgtcacacatgcacacacagctgAGGCAAGAGTACGACAGCCTGCAACTGCAGACCAAAGAGCTGAAGACCTCTCTGAATGAGTCTCAGCTGGAGCTGAACCGCTGGCAGGCACGCTATGACCAGCTGAAAGAGCAGCACCAGGGCCTGGACATCTCCATGACCAAACTGGACAACCACTGTGAGTTGCTAACCCGTTTGAAAGGAAACCTGGAGGAGGAAAACCATCATCTTCTCAGCCAAATCCAGATGCTCAGCCAGCAAAACCAGACCCTGCTGGAGAGAACAATGGAGAGTAAAGAACTTTACCACGAGGAGCAAAAACAGTACATTGATAAGCTGAATTCATTACGACGACAGAAAGAAAAACTCGAGGAGAAGATCATGGACCAGTACAAGTTTTATGACCCAACTCCTAAAAAGAGTCGTCAGTGGGTTGGAGCCAAAGCTATAGCAAAATTCATTAAACCCAAGAAAGAAAGTTCACGAGAGAGACCAGACGCTCCACGAGAAAGAATTAGAAGTGCTCCAGACATTCCTCTTCCGGAGATCCCCACATGTATAGACTGTCCTGAAAGTGCACCACCTCCTCCCCCTCCACCACTGCCTCCCAGACAGTCCCGTCCTAGTCTGGACTCCATGAACAGTCAGTCTGTGGAGGAGAATCACGTACAGTCACCAACCCTCTCTTCTCCTGCCCTCAACGGCCGAGtgttgaaTGAAAGTGGAGGATCAAGAAGCAGAGACGGGTACCGCTCAATAGGAGGCGGCAGTGAGAGCATGAATGGGTACGAGGAGCTGCTTCGCTGGAGGAGCCGAGAGCCAGGAGGAGCAACCTGTTCAACTCCACTAAGCCGCAACTCCCACAATGCACCAGGCTTCACGTCCTCCTCCAGCTTGCGGCCAGGACGCAGGCCAAAGGGGCTGGTCTCAGAGGAAGACTTGCGCCATCATTCTCCAGATGCTGGGTTTGGCAGTGGTGTCCATGGAAACACAGGACACAGGCCCAGTTCTGCCGAATTCAGCCGCAACACCTCCAGCAGCAACTCCCCTGTCAGCTCTAAAGGGTCTCTGGATTGTCTGCAGGGCCGATCTGCCAGTCTGTCCAGTGATGATGTGGTTGGACTGGCTCACGAAGGCTCTCGTCTCAGTCAGTCGTCTCTTCTTCCTCGTAGCTCCACTCTTCCCTGTGATTCCCCGTCTGCTTCACGCCCCTCCCAGAGGCCTGCGTCCCGCCGGCCGTCCTCTCCGGGCAGTGAGATGGTCACTCTGGAGGAGTTCCTGCAGGAGAGTAATGCCCTCTCACCACCCACTGTGCAGACCGGCAGTCGAGAGGACCTGATGACTGATTATTTCACTAGATCTACTCGACCCGTTCCTCTTCGAGATGGTGCTAAAACCCCCACCAATTATGTTACGCCCACTGTCAAGACCACACCACCAGAACTAGACGCTCGGACCCCCAAACCAGGACACAGCGTCAAACCAAGTGTTCGCCTTACAGACACCTCCACACCACCTTCGCACTCTCAAACCCTTCCCAACAGAGGAGCGGGACTGCGACCCTCAGCACTGCAGCAGTCCAGTCCTCGCGGAAGTGTGGGTGGCAGTGCCAGCCTGAGCCGCACATTCAGTCTGGCCTCTGCAGACCTGCTCCGCTCCAACGGACCCGACAGCTACCGCACAGAAGCAGCTTCTCCCAACCAAAACGATGTGGTGATGAGGAGACCTGGTGCAGTTGCTAGAGAAAGACCAATGTCTGCTAGAGTGACAGGATCCTCGCCATTGCCTGGAGATCCAGGGCACATTTCTGTGGACCCCCGTCGTCTGTCTCTTGCTCAACCGAGAGATGAGTTTTCCCTGGTCAGTCCTCCTCCACTTCACTCTTCCTCCATGTCTCTACAAGCTGAACGGGAGTATGTCGGGAGTGGTAGTAGCCGAGCAGGAGCAGCTCGTTCTGGGTCTGCCCAACCCCGAGGAGCTCCCCACCGTGGTGAAGTGGCCATGGTGACTCCAGTGCGAGCTGTACCAGCTTTGAGGCTGAACGATTTGGAGGAGGAACCTCAAGAGCAAAGGGAGGCAGAGTCTCCTCTACTGAAGAAGGCAGACACGACAAACTTAAGCTATGCCTCCAAGGAGCAGCCCACCAGCAAACCTGCATCTCCAGACCCCAACAATGACCCTCAGACTGTGTGGTATGAATATGGCTGCGTGTAGAACCTCAGCCTTGGCTCAGAAACGCATGTGATGTATGAAACTGCACTGTAAACAGGGAGATCCAGTCAATCTGGAAGACAGATCAAATCTTTTCTTTCTCCAGGTGCATCAAAGGCACCAGGTTGCACACCTGTAAACGAATGTACGGGGCACTTGAATGTATTTTCTCCCTTTGTATCCAATCGAACGCCATTGATTTCTACCGCTCTCTGCAGCTCCATGGCAGGCCAGTCCATGTTCTATTCTGAATGTGGAAAACAAACGTTGGGCTGTGTGTGAGGAGCCACTCCCAGCGTAATTACTGAGTACAGACTTGCATCCATCTTTAGGAGGCACAGGACAGTTGCAGGTCCATCACCAAGACAGCCTCACAGGGACCCATTACGGGAAGCGGACTCTCTCTCACTCGCTCCCTGCTGACATACCAAACAATCTGCTCTTTTCTGCTTCTTGTGGGTGACCATGGGTTTGTTGTAGGACCTGGGTTTGGCTCAGGCTCTGTTCAGAAGCACGCAATAAGGCTGCGTAGCCAGAAAGAGAAGACGGTTGGGCATAAGGATAAGAAGCACCTACCTTGTGATTATAAGCTGGAAGAATGTCTCGGGAAGGGGTTTTCAGGTGGAATCTGGACACATTGCCCAGTTTCACTTCTGCATTTAGGGTTGTGCTAAATTGAAGctccatttgtttgtttgttttctgacaCGTTCATTTTATAACACTGCACAGCTGTTCTAATGGCCTGATGTTCTGCTTAAGGTTTATTTATTAACGTCTTTGAGGCAATTAAATAACACTTGTTTGTGGGTTGTTttaatgtgtgcatatatatatatatgtgtgtgtttgcctaATGTTTTGAGTAATGGAGTAGTTTGATTCAAACCCCCGCCCCGATCATGTCCCTAATGCTGTGTGTATGTCCTTTGTTACCTGGCAGTGGTGCTTTTCTGCCATCTCAAGTCAACAACTCATGGTCTGATCACCAAAGATGGCAGATCTTCATCTAGAATAATATATTTAGATCAAGCGTTCACACTGGGTGTGTAAATATAAAGAGTGTCTCCTTTTGGAATGTGCACAACTACTGCTTAGCTGGTTTTAGATATACAACTGATTTTTATATACACTATTGCACATGAACATAGATCATTACCTGTAAGATATGGTGTGTCGAGTAGATTACAAACTTTTTACACTTTATAAAGTTTGTGAATGATAGATGCCTGTTTAGAGAAAGCTGATGTCCAAAACCCGAAATCTTTGTAATaaagctttttaaatatataaataaatgatttctgAAGTTGCATTTGATTGTTTGAGGCCAACTGCTggttcattcatatattttactaaatgtTTAACCTGAACGCAAAGTATAATTGTGAGAAAAGTATTGTTTAGTTAGGGGTGAGATAGCACATGCTTTCATAACCTTGAAAAAGTTATTAAACCACAACAAAAGAACTTTTCctgctatatttttatttaaaatagacaaatatatattatatatatatttatacatatatgatTGTAATCTCTAGTCTTGTTTAGCAGTGAGAAGACGATAACAAGTTTTAGTTTCATCAGTTGTGCAGACGGGAAACGTTTTAACACCGCTCTAATAATAGCTAACACATTATAACAATGACTAAGACGTTAAGAGTAAATGATGTTAGTGATGTCATTCTTCTGAATGTGTTTCTTCACCTCTTTTCTCTTGTTGATTTCAGCTGTCTAGCTTTGTGTTGCAATTgcaaaattaatcattaaaaaaactttttaatgattccaactgcaaaaaaaaaaaaaaaaaaacttcctacTCCATTCTATTGGGGTATATAATAACAAATCTACACACTTTAATCATGAAACTAAAACATTCCTAGTAGACAActgtgaaattcattcatttaccttcagcttagttcctttattcatcaggggtcaccacagcggaatgaaccaccaacttatccagcgtatgttttacacagcggatgccaacCATAAAATTAAATAGAGAAAAAAACGTCTAAACCTCATGGATACAGTCAAAGgtgttaaagggatagatcatTCCAAAAATCCCAATTTACTCACGCTGAAGTATTTCTCAATGTTAGTGAATTTCTTTTGTCGAGCATAaatgatattctgaagaatgttagaaaccagcagccattgacatccaaatGTAGGCTACTATGGAAGACAGTAATGGCTGCTGCTGACCAACATTCCTAAAATATTCatcgtttgtgttcaacagacgaaaCAAACTTGAACAAGTGGACTAGGATGAGTGaattattttttgggtgaactacccctttaccaggctttctgcaggtttcatcaattcaaatttaagacttttttcaaGACCCTTTTATGGCcattatgaatacaattttagatttatacagggctaaacactattGATTATTTCTAATGGCCTGGTTGGGCAAatggattttttaattttttttttttgcttgccacAAAAGCTACCGTAGTTTGTTCTTAGTGACATACTTTAATGTGTCATAACAAGGAAAGTCTAGTAGAATACACTATTTTCAACATAATATTACatacttttttaaatgacaagtttaacaatg
>TCONS_00023109
TTTGAATGAAACCCAGTACACACGAGTCAGATATTGGTCGTTTACTGCCTCCCACCGGTGGAGACGCGGTAGCTGATTGGCTGTCGAGCATGTCACTCGACTGTGCTCTTCATGCTGGTACAGGTTGAATGCACGGTGGTGGTAAAGTAACTCTAGCAAGCATTGAGGGTAAACGTAGAGAACTTTAAGTTTGATAGGACAAGTCAGCGTAGACGGTATTCCTAATGTATCTGCAACGTTTCACTTTTGGAATTGCAAATAGTTTAAAAGTTGTTTAAACTATTACCACGGGGGATGTTTTTTTATTACCAGAATGGAGTTGGTTCGCGTCTCCTGCATTGTTCTACGGTGGAAAGAATTGTGGAGTACATGAACCCCTAGAAGAATCCGACgcactttgttttttatttatttatgtggacGCACTTTCAGTTGCAAACAGTTTGAACTCTTTTAAGTGTGTGTTATTCATCTCAAAATGGATATTACAGTGTCTGAACTGATGAGTAACTTCATGGATTCGCCGCTTGTGGTTTGGgttAAAACTTTTGGACCTCTTGGGTTCAGTTCAGAAGACAAGCTCTCCATGTTCATGGATTTAGTGGATGGTGTTTTCCTCCATAAGATAATGACACACATAGACCCAAGCCCCATGAATCAGCGAGTGAACAAACAAGTCAACAATGATGTTAACCTGAGAATACAGAACCTCAATACTGTCATCCGACACATTAAAAATTACTACCAGgAGCATCTTCAGCAGCTCATCGTTATGAACCTGCCCAATGTGTTGGCCATCGCCAAGGACCCTTTATCAGGTAAAAGCATGGAGGAGATGAAACGAATGCTGTTGCTGATACTGGGCTGCGCTGTTCAGTGTGATCGCAAAGAAGAAATCATTGAGAAGATCAAGCTGCTTGATATTGAGACACAGGCTGCAATTGTGACGCATATTCAAGAGGTAACGCACAATCAGGAGAATGTTCTGGACCTGCAGTGGATGGAGGTTGCAGAGATCCCTGCTGAGCAGTTGGATCCTCTGTCTCGAACCATGGCCTTTCACTTACGCAAACTCATAGATGAGCGAGATGAGTCTGCTGAGCTGGTCATAGAGTTGACCCAGGAGAGGGACTATCTTCAGTCTCAGCAGCCTTCAGGTCTTTTGGGCTTTCCTAGCCCTGAGCGCACGTCCCTTTCTCCCATCACCCTGCTGTCTAAAGAAGATCGTCAGCATTTAGCCGTGGAGCTGGCTGACACAAAGGCCAAACTGCGGCGCTCCCGGCAGGAATTGGAAGAGAAGACTGAGCAGTTAATTGATGCCAAGAATGAGATCGAGCGCTTGGATTCTGATATTCAGAAGCTCAAACAGGAGAACACACAGTTGCTGGCAGAGGCACGTTCAGTGCGAGCATACCGGGATGAGGTTGATTCTCTAAGGGAGCGTGCTGGAAAAGTGGATCGCTTGGAAACCGAACTGTCTCGCTTCAAAGAGAAGCTAAATGATGTCCATTTCTACAAGACGCGCATAGAGGAGCTAAGAGAGGACAATTTGACTCTGCTGGAGACAAAGTCCATGCTGGAAGAGCAGCTTACTGGAGCCAGAGGGCGCTGTGACAAACTACACGAACTGGAGAAAGAGAACCTTCAGCTGCGCTCCAAACTGCATGATATAGAAATTGACAGGGACAGTGATAAGAAACGTCTGGAAGAGCTGCTGGAGGAGAACATGTTGCTGGAGATCTCTCAGAAACAAAGTATGAACGAGTCTGCTCACCTTGGCTGGGAACTGGAGCAACTAGCCAAGAACAATGAGGTCAATGAAGCCCGTAAGTCATTTGTGTTTGAGCTGAACGAGTCCGCATCCAGCCGACTGTTGAAGCTTGAGAAGGAAAACCAGTGCCTTCAGAGCACCATTCAGGAACTGAGAGAGGCCTCCATCAACATGGAGGAAGGTCAGCTGCATTCACTGGAGCTGGAGAAAGAGAACCAAAGCCTCAGCAAGAAGTTGGAGCGTCTGCAGTCCCAGTTGGACCAGGAGAAACAGACAACTCAGGACATGGAGAACCTTGGAGAGGAGCTAATAAAAGAGAAACAGAGAATGGAGAAAACTTTGGAGACAATCCAGGCAGAGAAAGATAGACAGATCTCAGAGTTGGAACAGGAGAAGGAGCACCTGACCCAGGCCGTGAGCTCCCTCCGGAAGCGGGCTCAGGCAAACAGCGAGGCCCGAGTGAGGGAGGTGGAAACAGAAAACCGCATTCTGCATCAGACTATCTCTGAAACGGGTGGTAAACTAGCTCGTCTGGAAGCTGAGAAACGTCAAGTGACTAAAGAGCTGGAATCTCTCCGCGAAAGAGGAGAGCGATGCGAGGAGTTGGAAAGGGAAGTTCCTCGTCTAGAGAGAGTCCGGGAGCAGCTACAACGGGAAGCAGCAGCCTTGAAGATCGGAAGCGAGCGTGCCGAAGCCTTGGAGCGGGAGAATGCCACTCTGGAGCAAGACAATCGCAGACTCAAGAAGTTGGCCGACACTGCACAGAATGCCACCCTGCGTCTGGCTGTTTTAGAGAAGGATCACCAGCAACTTGAGGAGGAGAACTTGGAGCAGCGTCGTGCATTGGAGACCCTCCGTCCAGCAGCTGCACGCTTGGCTCAATTACAGCAGGAACATGCAGAGCTGGAGCGAGAACACGAGGAGATGTGCCGCACGATGGAAGAGCTGCGTTCTCAGGCTAAGAGGAGTGAAAGACTAGAGAAGAGCTGTGGAAGCCTGAGTCTAGAGAACCAACGGCTGCAACAGACTCTGGAGAACAGCTCCACCAAAATGCAAGGTCTAGAAAGTGAACTGAGGCAGAATGAGGCAGAAATGAAGGATCTGCAGCGAGAATTAGAGGGTTTGAGGCAGAAGGTGACGTGGGCTGAAACGTTGGAGAAGGAGAATCGAGGAATGGAGCAGGAATTGAGCCAGCTAGAGAAGGAGAAAAAGCAGCTGGAGAAGGAGGCGCGGAGGTTCAGGCAGCAGTTGGAGGTGAAGGAGGCGGCGCTGGAAGAGAATTGTCTTAGGCTAGCCAGCATGGAGAAGGAAGGCACAGCTCTCAGTAAAGAGTTAGGCCGAGTTAAAGAGGCTGCAGGAAGACTCAAAGAGTTGGAGAGAGAGAACAAAGACCTGCAGAAACAGGCCACCATGGATAAGAAGACTCTTGCCACACTTAGAGAGGAGCTGGTGAATGAAAAGCTGAGGGTGCAGCAGCAGTGTAATGAACTGGAGAAGCTGAGTCACGAGCTGGAGAAGATCGGCCTaaacagagaaaaactcctgcagGAAGAGCACAGCTGTGAAGACAATAAATATAAGATCCTGGAGACCAAGATCGAGTCAGCACTGAAGAAAACTCTGGAGCTCAGAGAAGAGAAGATCCAGAGCCTGGAGTCTCGGCTGGAGGAGAGCagcagcttaaaccagcaactACGCACCGAACTCACCACTGTAAAGAAGAATCTGGAAGCCCTCAAGCAAAGGCATGAAGAAGAAGCAGCCCATTCTGAGATCTCCCAGCAGACTTTGGGACAGACTAGATCACTCCCAGATAAAGAGAAGTGGGAGATGGAGCAGAGGGAGGCCACGGCTGAACTGCTCAAGCTCAAAGACAGACTGATCGATGTTGAGAAGAATAATGCTGCTCTACAGACAGAGAAATATCTTCTGAAGGATCAGTTGAAGCAAATTGATTCTCAAAACGCACAGCTCAACGCACAAACACTAGCGCTGCAGAAACAGGCAGCATCCCTACAAGAACACAACACGTCTCTCCATAAAGAAACAGCTAAACTCCAGGTGGAAAACTCGACTCTAAGCTCTCAGAGCTCCTCTCTCATGGCTCAGTATGGAGCTTTACAGGCTCAGCTGCAGACTCTGGAGTCGGAGGCCGAGTCTCTGCAGAAACAGCGAGAGGAGGCGAGTGCGGCCCGTGATCGAGTCACACAGGACCATGAGCGTCTGTTAGGTGTGCATGAACGCCAGGCGTCCGAGTACGAGCAGCTCATTGCTCAACATGCAGCACTAAAGGCCAGCCAGAGAGCTCTGGAGCAAGAAAACCGCACACTGGAGAACAAGTATATGGTTCTTCTGAAGCAGAAGGACGCTATGGAGGCACTGGAGGAATCTTTGCAAAGGGACAGAGAAAGTCTAGGAGAGGAAATTCGCAAAAACACACTTATCCTGGGAGAGAATCGCAGTCTGAGGGAAGAAGTAGACAGAgtgtcacacatgcacacacagctgAGGCAAGAGTACGACAGCCTGCAACTGCAGACCAAAGAGCTGAAGACCTCTCTGAATGAGTCTCAGCTGGAGCTGAACCGCTGGCAGGCACGCTATGACCAGCTGAAAGAGCAGCACCAGGGCCTGGACATCTCCATGACCAAACTGGACAACCACTGTGAGTTGCTAACCCGTTTGAAAGGAAACCTGGAGGAGGAAAACCATCATCTTCTCAGCCAAATCCAGATGCTCAGCCAGCAAAACCAGACCCTGCTGGAGAGAACAATGGAGAGTAAAGAACTTTACCACGAGGAGCAAAAACAGTACATTGATAAGCTGAATTCATTACGACGACAGAAAGAAAAACTCGAGGAGAAGATCATGGACCAGTACAAGTTTTATGACCCAACTCCTAAAAAGAGTCGTCAGTGGGTTGGAGCCAAAGCTATAGCAAAATTCATTAAACCCAAGAAAGAAAGTTCACGAGAGAGACCAGACGCTCCACGAGAAAGAATTAGAAGTGCTCCAGACATTCCTCTTCCGGAGATCCCCACATGTATAGACTGTCCTGAAAGTGCACCACCTCCTCCCCCTCCACCACTGCCTCCCAGACAGTCCCGTCCTAGTCTGGACTCCATGAACAGTCAGTCTGTGGAGGAGAATCACGTACAGTCACCAACCCTCTCTTCTCCTGCCCTCAACGGCCGAGtgttgaaTGAAAGTGGAGGATCAAGAAGCAGAGACGGGTACCGCTCAATAGGAGGCGGCAGTGAGAGCATGAATGGGTACGAGGAGCTGCTTCGCTGGAGGAGCCGAGAGCCAGGAGGAGCAACCTGTTCAACTCCACTAAGCCGCAACTCCCACAATGCACCAGGCTTCACGTCCTCCTCCAGCTTGCGGCCAGGACGCAGGCCAAAGGGGCTGGTCTCAGAGGAAGACTTGCGCCATCATTCTCCAGATGCTGGGTTTGGCAGTGGTGTCCATGGAAACACAGGACACAGGCCCAGTTCTGCCGAATTCAGCCGCAACACCTCCAGCAGCAACTCCCCTGTCAGCTCTAAAGGGTCTCTGGATTGTCTGCAGGGCCGATCTGCCAGTCTGTCCAGTGATGATGTGGTTGGACTGGCTCACGAAGGCTCTCGTCTCAGTCAGTCGTCTCTTCTTCCTCGTAGCTCCACTCTTCCCTGTGATTCCCCGTCTGCTTCACGCCCCTCCCAGAGGCCTGCGTCCCGCCGGCCGTCCTCTCCGGGCAGTGAGATGGTCACTCTGGAGGAGTTCCTGCAGGAGAGTAATGCCCTCTCACCACCCACTGTGCAGACCGGCAGTCGAGAGGACCTGATGACTGATTATTTCACTAGATCTACTCGACCCGTTCCTCTTCGAGATGGTGCTAAAACCCCCACCAATTATGTTACGCCCACTGTCAAGACCACACCACCAGAACTAGACGCTCGGACCCCCAAACCAGGACACAGCGTCAAACCAAGTGTTCGCCTTACAGACACCTCCACACCACCTTCGCACTCTCAAACCCTTCCCAACAGAGGAGCGGGACTGCGACCCTCAGCACTGCAGCAGTCCAGTCCTCGCGGAAGTGTGGGTGGCAGTGCCAGCCTGAGCCGCACATTCAGTCTGGCCTCTGCAGACCTGCTCCGCTCCAACGGACCCGACAGCTACCGCACAGAAGCAGCTTCTCCCAACCAAAACGATGTGGTGATGAGGAGACCTGGTGCAGTTGCTAGAGAAAGACCAATGTCTGCTAGAGTGACAGGATCCTCGCCATTGCCTGGAGATCCAGGGCACATTTCTGTGGACCCCCGTCGTCTGTCTCTTGCTCAACCGAGAGATGAGTTTTCCCTGGTCAGTCCTCCTCCACTTCACTCTTCCTCCATGTCTCTACAAGCTGAACGGGAGTATGTCGGGAGTGGTAGTAGCCGAGCAGGAGCAGCTCGTTCTGGGTCTGCCCAACCCCGAGGAGCTCCCCACCGTGGTGAAGTGGCCATGGTGACTCCAGTGCGAGCTGTACCAGCTTTGAGGCTGAACGATTTGGAGGAGGAACCTCAAGAGCAAAGGGAGGCAGAGTCTCCTCTACTGAAGAAGGCAGACACGACAAACTTAAGCTATGCCTCCAAGGAGCAGCCCACCAGCAAACCTGCATCTCCAGACCCCAACAATGACCCTCAGACTGTGTGGTATGAATATGGCTGCGTGTAGAACCTCAGCCTTGGCTCAGAAACGCATGTGATGTATGAAACTGCACTGTAAACAGGGAGATCCAGTCAATCTGGAAGACAGATCAAATCTTTTCTTTCTCCAGGTGCATCAAAGGCACCAGGTTGCACACCTGTAAACGAATGTACGGGGCACTTGAATGTATTTTCTCCCTTTGTATCCAATCGAACGCCATTGATTTCTACCGCTCTCTGCAGCTCCATGGCAGGCCAGTCCATGTTCTATTCTGAATGTGGAAAACAAACGTTGGGCTGTGTGTGAGGAGCCACTCCCAGCGTAATTACTGAGTACAGACTTGCATCCATCTTTAGGAGGCACAGGACAGTTGCAGGTCCATCACCAAGACAGCCTCACAGGGACCCATTACGGGAAGCGGACTCTCTCTCACTCGCTCCCTGCTGACATACCAAACAATCTGCTCTTTTCTGCTTCTTGTGGGTGACCATGGGTTTGTTGTAGGACCTGGGTTTGGCTCAGGCTCTGTTCAGAAGCACGCAATAAGGCTGCGTAGCCAGAAAGAGAAGACGGTTGGGCATAAGGATAAGAAGCACCTACCTTGTGATTATAAGCTGGAAGAATGTCTCGGGAAGGGGTTTTCAGGTGGAATCTGGACACATTGCCCAGTTTCACTTCTGCATTTAGGGTTGTGCTAAATTGAAGctccatttgtttgtttgttttctgacaCGTTCATTTTATAACACTGCACAGCTGTTCTAATGGCCTGATGTTCTGCTTAAGGTTTATTTATTAACGTCTTTGAGGCAATTAAATAACACTTGTTTGTGGGTTGTTttaatgtgtgcatatatatatatatgtgtgtgtttgcctaATGTTTTGAGTAATGGAGTAGTTTGATTCAAACCCCCGCCCCGATCATGTCCCTAATGCTGTGTGTATGTCCTTTGTTACCTGGCAGTGGTGCTTTTCTGCCATCTCAAGTCAACAACTCATGGTCTGATCACCAAAGATGGCAGATCTTCATCTAGAATAATATATTTAGATCAAGCGTTCACACTGGGTGTGTAAATATAAAGAGTGTCTCCTTTTGGAATGTGCACAACTACTGCTTAGCTGGTTTTAGATATACAACTGATTTTTATATACACTATTGCACATGAACATAGATCATTACCTGTAAGATATGGTGTGTCGAGTAGATTACAAACTTTTTACACTTTATAAAGTTTGTGAATGATAGATGCCTGTTTAGAGAAAGCTGATGTCCAAAACCCGAAATCTTTGTAATaaagctttttaaatatataaataaatgatttctgAAGTTGCATTTGA

Function

symbol description
ccdc88c Enables guanyl-nucleotide exchange factor activity. Involved in neural tube formation and small GTPase mediated signal transduction. Predicted to be located in cell junction. Predicted to be active in centrosome and cytoplasm. Human ortholog(s) of this gene implicated in hydrocephalus and spinocerebellar ataxia type 40. Orthologous to human CCDC88C (coiled-coil domain containing 88C).

GO:

id name namespace
GO:0030705 cytoskeleton-dependent intracellular transport biological_process
GO:0003383 apical constriction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0001841 neural tube formation biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005813 centrosome cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0001965 G-protein alpha-subunit binding molecular_function
GO:0051959 dynein light intermediate chain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100419-3 Enables guanyl-nucleotide exchange factor activity. Involved in neural tube formation and small GTPase mediated signal transduction. Predicted to be located in cell junction. Predicted to be active in centrosome and cytoplasm. Human ortholog(s) of this gene implicated in hydrocephalus and spinocerebellar ataxia type 40. Orthologous to human CCDC88C (coiled-coil domain containing 88C).

Ensembl:

ensembl_id ENSDARG00000053713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023108 False 9374 mRNA 0.47 29 38602602 38716245
TCONS_00023109 True 7789 mRNA 0.50 30 38602790 38714926

Neighbor

gene id symbol gene type direction distance location
XLOC_011615 sptb coding upstream 3580 38566717 ~ 38599022 (+)
XLOC_011614 stard9 coding upstream 48018 38476300 ~ 38554584 (+)
XLOC_011613 cdan1 coding upstream 129132 38447473 ~ 38473470 (+)
XLOC_011612 mbip coding upstream 294223 38295847 ~ 38308379 (+)
XLOC_011611 nkx2.1 coding upstream 337977 38262408 ~ 38264625 (+)
XLOC_011618 GPR68 coding downstream 8228 38724473 ~ 38725534 (+)
XLOC_011619 NA coding downstream 62736 38778981 ~ 38782957 (+)
XLOC_011620 NA coding downstream 66916 38783161 ~ 38784521 (+)
XLOC_011621 NA coding downstream 206052 38922297 ~ 38929367 (+)
XLOC_011622 NA coding downstream 468783 39185028 ~ 39188768 (+)
XLOC_011609 NA non-coding upstream 349536 38248048 ~ 38253066 (+)
XLOC_011606 NA non-coding upstream 680580 37900431 ~ 37922022 (+)
XLOC_011605 NA non-coding upstream 934078 37665651 ~ 37668524 (+)
XLOC_011602 AL929543.1 non-coding upstream 1148795 37453676 ~ 37453807 (+)
XLOC_011601 NA non-coding upstream 1204192 37380500 ~ 37398410 (+)
XLOC_011624 BX469913.1 non-coding downstream 709847 39426092 ~ 39426212 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_00501459_00565291 CCDC88C coding CI01000062 null 501459 ~ 565291 (-)