XLOC_011620


Basic Information

Item Value
gene id XLOC_011620
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 38783161 ~ 38784521 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024731
CAAATACTACTTTGAAGCCCCTGcgcaataaaataaatgtttttttttttaatttgagtgTGAAATATGACCTAGGCACATCATCATGAGCTTCATCCTTACTGTGAGCTCACAAAGCTTTTTGCCCTGCTTTAGAAATGGCTTCTCTGTGTCAAATCATGCATTACAGACAAACGGTAATAAAGATCCAGAGAGGGAGGAGAGAGTGCATTGGAAATAAAGAAAAGGTGGCCTCTTCAGGTCACGGATATAAATCCACCCTCCCTCCCTTCTACTGTAAGGAAGCACTGGTTCAAACAGGATCAGTGATGTTAGATATCTACATATAAACAACAAACTTGGAGCATGTTTGCAAAAAATCCAGGATCTCATCAGTGTGTGTACGAAATTGTAAAGCAGTTATCATCAGTCTCATCTTCCACACCGCCAAACGAGCAACGAGCGGTCCTGAGGGTCTTCTGCTCTGGTCTGAATGAGAGGTGAGGAGCAGCTTTTGATGTGTGCTTTATGATTGGTTCCATTCACTGGTTAATGCAGGTCTGGAATGAGAAACGGGGAAACCAAAACGTGTCTAATTGCAGAGCTTCTGCTCCTCCTCGCTGACCTCTCCTCCAATGGGAACCCTGCCGGAGGCTCTCAGCTGGAAATACATCATCCAGCTCATAAGAAGCCCATACAGTCTCTCGCACCCCCCGCTGCATGATCGAGAAAACCCTTCACATCTGGAATGCGTGTGATTTTCAACAGTTTTCTTGTGTGCAACGAGCTGCGAGAATCAGTTTCTTGCTCGAGGGCAGTTCCGCCGTTTTATTGCGCCCACATCAAGGACgtatttttcatttttccatactggaggaaataaattaatagaaTATAGATGTTTTATGCCACATATAAAGTGCATTATGTTCACGTTCATGTCAGACAGTGTCTCAAGGGAAGACAGAAATTCGAAAAATGTAGATTGCTAATGCACACAGGAATGAGCAGCATTCTTTGTCAGTGGCGTGTGATGAAAGTGTGACCGTTTGAATGCTCCTGCTCTGAACGATCCGGTaaagacttttttctttttttttttagatggggCTGCGTTGTGATTGTCCGAGGTTCAGAAGTGGAAAGGATTTCCAGTTACAAAAAGGAGCTGCCAAGGAGAATTTCGGTTCCTGGAAATTGGTGAAGAAGAGAAaTAGAGCAGATTGAACTGGAGAAACAGCAGATTCATTGGTGATTTTGGTTGTCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024731 True 1247 lncRNA 0.43 2 38783161 38784521

Neighbor

gene id symbol gene type direction distance location
XLOC_011619 NA coding upstream 204 38778981 ~ 38782957 (+)
XLOC_011618 GPR68 coding upstream 57627 38724473 ~ 38725534 (+)
XLOC_011616 ccdc88c coding upstream 66916 38602602 ~ 38716245 (+)
XLOC_011617 NA coding upstream 117702 38665041 ~ 38665459 (+)
XLOC_011615 sptb coding upstream 184139 38566717 ~ 38599022 (+)
XLOC_011621 NA coding downstream 137776 38922297 ~ 38929367 (+)
XLOC_011622 NA coding downstream 400507 39185028 ~ 39188768 (+)
XLOC_011623 zgc:174356 coding downstream 457916 39242437 ~ 39316202 (+)
XLOC_011624 BX469913.1 coding downstream 641571 39426092 ~ 39426212 (+)
XLOC_011625 NA coding downstream 844001 39628522 ~ 39628821 (+)
XLOC_011609 NA non-coding upstream 530095 38248048 ~ 38253066 (+)
XLOC_011606 NA non-coding upstream 861139 37900431 ~ 37922022 (+)
XLOC_011605 NA non-coding upstream 1114637 37665651 ~ 37668524 (+)
XLOC_011626 BX469926.2 non-coding downstream 908061 39692582 ~ 39692696 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_00459377_00459927 NA coding CI01000062 null 459177 ~ 460140 (-)