XLOC_011623 (zgc:174356)


Basic Information

Item Value
gene id XLOC_011623
gene name zgc:174356
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 39242437 ~ 39316202 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023111
AAGCATTAACACGAAAACACATTTCTCTCGTCCACTATTCCCTCTAGACAGTATGAACGCTTGACATGGATTTACTCTTCCAAACACGGCTTTAATATTAAAAGACACTTTCTATATCCGTCAAATCTGAACATGTCGTCATGGAAAGAGAAACTGAGGAGAATAGTTACGGTGGAGCCAGTGATCTTTCTCTACATGAGCAGCAGTTTCATTGTAACACCTGCAATTCAACAGATGATTATCACAAAGGGCTTTGGTCTGCTGGGTCTTTTTCCTCTGCTGATGAGGTGTGTTAAGGAGATGACATTAGCCAAACTCAGCGCCGTCTTCAGAATCGCCTCTTACATCTTGCTGGCTCTCTCAAACAACACATGGATGGTGTTTCTCGttGCTGTAGTCGGTGCTCCATCTGGTATCAGTCAAGCAGTGATTCGTTCTTTGTCTTCTGCCATCGTGGGACCTGATGAACAAGGTGCCATGTTCTCCTTCTCGGCCTCAGTGGAAGCGACCTGCATCCTCATTGCTGCTACCATCTTTAACGGTCTGTACCCTCTGACCCTCCCAACCTTCCCCGGGATGCCCTTTATCATCATGGCTGCCTTCATGCTCATCGTGCTCATTCTTTTGCAGTGGATTAGTGAGTTGCCCAGCACTCATCCTCGCCTCGTGCTTTCAGACTGAATCTCCTCCTTCTGGGCTACTCTTCCAGCACCAAGTGGATCAATGATTGGATATTGCACTCTTTTCTATAAGAAACTGATCTTCTCTTAAAGTCAAGCTAAATGCTTCTGCCTCAGAGagagaaaatctttttttacacGAGGAACACACAACTTCCTGTAGTGGCACACATTCCACTATAAACAACTTGTGTGATCTTACTTCAAAAGTGAATGAAACACAGACAAATTCACCAGTTGCACTTTAAAACTGATTCTTTTGTAATATATGTAAGCATTGTACAATAAATTTCAAGCTACAG
>TCONS_00023112
ATGAACGCTTGACATGGATTTACTCTTCCAAACACGGCTTTAATATTAAAAGACACTTTCTATATCCGTCAAATCTGAACATGTCGTCATGGAAAGAGAAACTGAGGAGAATAGTTACGGTGGAGCCAGTGATCTTTCTCTACATGAGCAGCAGTTTCATTGTAACACCTGCAATTCAACAGATGATTATCACAAAGGTATGTCAAGACGTGCTGAAAAACGTCAGTATCTGCAGTGACCCTGAGCACCACAAAGAGTATGAGCATGTTCAGACTACATCCTCCTACATCTTTCTTCAGTTCAATGCCATCCTCAGCCTGGTCTCCATCCCTCCTGCCATCATGCTGGGCTCGTGGTCAGATAGCGCTGGCCGTCGATCAGTCATGGCTCTGCCGTCAGTTCTGTCTCTGCTGAGTGGAGGCTTGCTCTTGGCTGTATCTCTTCTGGACAACATCAGTGTTTACTGGACTCTGATGGCTGCCGCTTTAATGGGCCTGACAGGCGGCCATGTTTCCATATTCCTCAGCTCTTTCAGCTACCTGGCCGACTTGACCATGGGCTCCAGTTCCACTCGCACTTTGCGTATGGCAGTGGCCGAGTCCATGATTTTTGTAGGAGGCACGATTGGCTTCCTACTTGGCGGATTCCTGGAGCAAGAATTCGGGCTTCAGGCTGCATTTGGGGCTTACATTGGCTGTCATGTTCTGGTGTTGCTTTATATTGTGCTTTGGCTGAGAGACCCCTCGGTGGGGAAAAACACACGTTTAGTTCTCTGCAAAGAGGAGACGGCTGAAAGCGGATCTCAGGAAGATCAGTCTCGGCTGTTTATCCTAAAGTATGCCAAGATGTCTTTCAAAGCAGTGTTCAAGAGGAGGTCAGGGCAGGAGAGGATGAAACTGCACTTTCTCATGCTCTGCACTTTCATAAATAACCTGGTGGCTGTAGGGGAACAGTCGATCTTGCTGCTGTATTTGATGTATGAGCCGAGAGAGTTCACAACTGCCCTGTTTGGGGTTTTTAACTCAGTGAAGATGCTCTTGTTGGGCTTTGGTCTGCTGGGTCTTTTTCCTCTGCTGATGAGGTGTGTTAAGGAGATGACATTAGCCAAACTCAGCGCCGTCTTCAGAATCGCCTCTTACATCTTGCTGGCTCTCTCAAACAACACATGGATGGTGTTTCTCGttGCTGTAGTCGGTGCTCCATCTGGTATCAGTCAAGCAGTGATTCGTTCTTTGTCTTCTGCCATCGTGGGACCTGATGAACAAGGTGCCATGTTCTCCTTCTCGGCCTCAGTGGAAGCGACCTGCATCCTCATTGCTGCTACCATCTTTAACGGTCTGTACCCTCTGACCCTCCCAACCTTCCCCGGGATGCCCTTTATCATCATGGCTGCCTTCATGCTCATCGTGCTCATTCTTTTGCAGTGGATTAGTGAGTTGCCCAGCACTCATCCTCGCCTCGTGCTTTCAGACTGAATCTCCTCCTTCTGGGCTACTCTTCCAGCACCAAGTGGATCAATGATTGGATATTGCACTCTTTTCTATAAGAAACTGATCTTCTCTTAAAGTCAAGCTAAATGCTTCTGCCTCAGAGagagaaaatctttttttacacGAGGAACACACAACTTCCTGTAGTGGCACACATTCCACTATAAACAACTTGTGTGATCTTACTTCAAAAGTGAATGAAACACAGACAAATTCACCAGTTGCACTTTAAAACTGATTCTTTTGTAATATATGTAAGCATTGTACAATAAATTTCAAGCTACAGAATGA

Function

symbol description
zgc:174356 Predicted to enable transmembrane transporter activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within mRNA processing; protein ubiquitination; and transmembrane transport. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0055085 transmembrane transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080215-21 Predicted to enable transmembrane transporter activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within mRNA processing; protein ubiquitination; and transmembrane transport. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000088263

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023111 False 982 mRNA 0.43 5 39242437 39316197
TCONS_00023112 True 1781 mRNA 0.47 7 39242489 39316202

Neighbor

gene id symbol gene type direction distance location
XLOC_011622 NA coding upstream 53669 39185028 ~ 39188768 (+)
XLOC_011621 NA coding upstream 313070 38922297 ~ 38929367 (+)
XLOC_011620 NA coding upstream 457916 38783161 ~ 38784521 (+)
XLOC_011619 NA coding upstream 459480 38778981 ~ 38782957 (+)
XLOC_011618 GPR68 coding upstream 516903 38724473 ~ 38725534 (+)
XLOC_011624 BX469913.1 coding downstream 109890 39426092 ~ 39426212 (+)
XLOC_011625 NA coding downstream 312320 39628522 ~ 39628821 (+)
XLOC_011626 BX469926.2 coding downstream 376380 39692582 ~ 39692696 (+)
XLOC_011627 eprs1 coding downstream 381419 39697621 ~ 39739994 (+)
XLOC_011628 si:dkey-229e3.2 coding downstream 425724 39741926 ~ 39751592 (+)
XLOC_011617 NA non-coding upstream 576978 38665041 ~ 38665459 (+)
XLOC_011629 NA non-coding downstream 450105 39766307 ~ 39784142 (+)
XLOC_011630 dre-mir-2185-1 non-coding downstream 469613 39785815 ~ 39785912 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location