XLOC_011628 (si:dkey-229e3.2)


Basic Information

Item Value
gene id XLOC_011628
gene name si:dkey-229e3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 39741926 ~ 39751592 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023117
ACAGGTACTTGCATTGCTTGCTTCTCCTGTTTATATAACGTCAGACCGTCGGCAGAAAATTGCGGAAGCGCGACGTGGATAATCTATAATCAGCTTTCAAACTATTTAATTTACCTGTTGCTCTTCGTTTATGAGATTCTTTGGCCTTGTCCCTAAACATTGAAGCCAAGCAGTGGAGgaaatttgtttaaaaaggaaGCGCGTGTCCTCAAATCTGCCTCTGAAACACAATGGGATCACAATCACTGCCTCCTTTGGGACAGCAGAGAACAAACTACACAGACGACAACAACAGAATTTAGGTCATTACAGAGGCATATCGACTCCTGCTGAATCAGCTGCAGCTTAAAAGAACAAATAGATGTAGACAGAAGAGTAACGGGCCCTGAGGTTTGACTGCATTACGTTGTTGTGTGTAATGGGAGAGTGTGTGTTGGACCGCTATGAAGAAGATGGGTTTCAGAGTTGTGAAGGGTTTGACAACTGGGCCTCATTTAGCTCTGCAGACTGGACAGAAACCCAGAAAAATAACAATGAGTTTTCAGACTGGGCTGGATTTCATGATAACACCGGGAAGGAGGACTTTTCAACAATGCCTTTGGCGGAAACAGGAACTTTCAGCCGTCATGAAAATTGAAGCTGCAAGTTTCTGGTGTCATTTACAGTCTGGGTCAAAAATGCTAAGATTGTCAGGTCCCAAACCCAAACTACACTCCCAGGAagcactgctaaaaacactgcaGCTCAGACAGCCTGACGCA
>TCONS_00023118
TTGCTTCTCCTGTTTATATAACGTCAGACCGTCGGCAGAAAATTGCGGAAGCGCGACGTGGATAATCTATAATCAGCTTTCAAACTATTTAATTTACCTGTTGCTCTTCGTTTATGAGATTCTTTGGCCTTGTCCCTAAACATTGAAGCCAAGCAGTGGAGgaaatttgtttaaaaaggaaGCGCGTGTCCTCAAATCTGCCTCTGAAACACAATGGGATCACAATCACTGCCTCCTTTGGGACAGCAGAGAACAAACTACACAGACGACAACAACAGAATTTAGGTCATTACAGAGGCATATCGACTCCTGCTGAATCAGCTGCAGCTTAAAAGAACAAATAGATGTAGACAGAAGAGTAACGGGCCCTGAGGTTTGACTGCATTACGTTGTTGTGTGTAATGGGAGAGTGTGTGTTGGACCGCTATGAAGAAGATGGGTTTCAGAGTTGTGAAGGGTTTGACAACTGGGCCTCATTTAGCTCTGCAGACTGGACAGAAACCCAGAAAAATAACAATGAGTTTTCAGACTGGGCTGGATTTCATGATAACACCGGGAAGGAGGACTTTTCAACAATGCCTTTGGCGGAAACAGGAACTTTCAGCCGTCATGAAAATGCTGATAATGGTGATGAGGTAAACCCCTGGTTCGTTTTTAACAACTGCTTTCAAGTTGAGAAGGCAGAAAAAGATCCTGTTGTGATGGAAATTCCCACACTATCCCTGCTGCCAGAACACACCACAGACATGCTCTCTCAGTCTGCTGCAATAACAAGTGAAGCTGCAAGTTTCTGGTGTCATTTACAGTCTGGGTCAAAAATGCTAAGATTGTCAGGTCCCAAACCCAAACTACACTCCCAGGAagcactgctaaaaacactgcaGCTCAGACAGCCTGACGCAAACACTCATGCACAGACCAACACTCTTCGAGATCTTGAACTAGAGGTACAGGAAGACCGTCCCGGTGCGCTTATTCAAACTAAGctgATGCCATCATCAAACTGCCGTAATGCTCCAGGATTCTTTTATCAGGTCTCACGTCACTGGCTTAACATGAACCTGAACAAGCACAACAATGATCCTCTGCAGTAattaacttcacacacacacacacacacacacacacacaggagtcaCACTGTTACACTCAAAAGACTGAAtttctagt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-296 No description available

Ensembl:

ensembl_id ENSDARG00000097217

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023117 False 761 mRNA 0.44 3 39741926 39748324
TCONS_00023118 True 1170 mRNA 0.44 6 39741943 39751592

Neighbor

gene id symbol gene type direction distance location
XLOC_011627 eprs1 coding upstream 1932 39697621 ~ 39739994 (+)
XLOC_011626 BX469926.2 coding upstream 49230 39692582 ~ 39692696 (+)
XLOC_011625 NA coding upstream 113105 39628522 ~ 39628821 (+)
XLOC_011624 BX469913.1 coding upstream 315714 39426092 ~ 39426212 (+)
XLOC_011623 zgc:174356 coding upstream 425724 39242437 ~ 39316202 (+)
XLOC_011629 NA coding downstream 14715 39766307 ~ 39784142 (+)
XLOC_011630 dre-mir-2185-1 coding downstream 34223 39785815 ~ 39785912 (+)
XLOC_011631 ubr1 coding downstream 38796 39790388 ~ 39817543 (+)
XLOC_011632 NA coding downstream 73943 39825535 ~ 39830238 (+)
XLOC_011633 UBR1 coding downstream 83355 39834947 ~ 39868435 (+)
XLOC_011622 NA non-coding upstream 553158 39185028 ~ 39188768 (+)
XLOC_011621 NA non-coding upstream 812559 38922297 ~ 38929367 (+)
XLOC_011634 NA non-coding downstream 215435 39967027 ~ 39971071 (+)
XLOC_011635 NA non-coding downstream 464845 40216437 ~ 40221377 (+)

Expression


Co-expression Network