XLOC_011631 (ubr1)


Basic Information

Item Value
gene id XLOC_011631
gene name ubr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 39790388 ~ 39817543 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023122
gttgctgtgGTGACGCTTTACGGCATTTGGATCATGGCGGAGTCGCTGAGCGCTGCACAGTTGAGCACGAAATGGCAAGAGGCTTCAAACAGAGGATCTGCCATACTCCGCTATCTGGGGGAGCAGGTCCCCCTTATTTACTGCCTGGAGGTGGAGCTTCAACATGCGGAGGAGGAGCTAAAGGTTGAGCAACGCCTCCTGTATCCTCTGGAGTACTTTCTTTTTGGAGAAGAGCCTTGTGTCGGCCTGGAGAAACTACAGCGGTACAACAGCAGCTCATCAGCTCAGCAGTGTGGACGCGTCTTCAAAGAGGGAGAAACTGTGTATTCCTGCAGGGATTGTGCAATCGATCCCACCTGTGTGCTCTGCATAGAATGCTTCCAGAAGAGTGTGCACAAAAGCCATCGCTACAAGATGCACGCCTCATCAGGAGGAGGTTTTTGTGACTGTGGAGATGTGGAGGCTTGGAAAACAGGACCCTGCTGCTCTCAACATGACCCTGGCACTGAAGCAACTATGGAGACGgatGAGTGTGTGATGGATCCAGGCCTTCAGGAAAGGGCTCAGATGCTGTTCCACCTGCTGCTGCAGTACACAACAGACATGCTGATTTGGGAGGAGAACAATGACCTGTCAGAAGAGCTCAAGCCTAAagtGAAGGAAGACAGCTACTTCTGTATCCTCTACAACGATGAGCATCACTCATATGACCACGTCATCTACACACTTCAGCGAGCCATCGCCTGTGACCAGAATCAGGCTCAAGTTTATACTGCACTTATTGACAAGGAAGGGCGAAGAGCAGTGAAAAGAGGGACTCTCAGAACCTGTCAACAAGCCAAGGACAATATCAGGCGTAACTCAGAGCACATTATCCAGAAACCCCTGCGTGTGGAGGTTCTTCACACTGCGGTTATGGCTCATCAGACTTTCGCTCTCAGACTCGGTGCATGGTTTCAGAAGATCATTGGCTATTCAGTTGGCTTCAGGGATGTGTTCTGCCAGATGGCTTTAGAGCCGGCCTCCGACAATGATAAACTCAGCCTGATCAGTCGATTAATGCTGCACGATGCCAAACTGTATAAAGGAGCCCGCAAGGTTGTCCATGAGTTAATTTTCTGTAGTTTACTGATGGACACAGAATACAAAAGGCAGTTTGCCATGAAATTCACAGAGCACTATAAGCAGCTTCAGGAGGACTTCATCAGTGATGACCATCAGAGAAACATCTCCATCACAGCCCTGTCTGTGCAAATCTTCACTGTGCCCACTTTGG

Function

symbol description
ubr1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process via the N-end rule pathway. Predicted to act upstream of or within protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Johanson-Blizzard syndrome. Orthologous to human UBR1 (ubiquitin protein ligase E3 component n-recognin 1).

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-091110-2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process via the N-end rule pathway. Predicted to act upstream of or within protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Johanson-Blizzard syndrome. Orthologous to human UBR1 (ubiquitin protein ligase E3 component n-recognin 1).

Ensembl:

ensembl_id ENSDARG00000060480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023122 True 1276 mRNA 0.50 11 39790388 39817543

Neighbor

gene id symbol gene type direction distance location
XLOC_011630 dre-mir-2185-1 coding upstream 4476 39785815 ~ 39785912 (+)
XLOC_011629 NA coding upstream 6246 39766307 ~ 39784142 (+)
XLOC_011628 si:dkey-229e3.2 coding upstream 38796 39741926 ~ 39751592 (+)
XLOC_011627 eprs1 coding upstream 50394 39697621 ~ 39739994 (+)
XLOC_011626 BX469926.2 coding upstream 97692 39692582 ~ 39692696 (+)
XLOC_011632 NA coding downstream 7992 39825535 ~ 39830238 (+)
XLOC_011633 UBR1 coding downstream 17404 39834947 ~ 39868435 (+)
XLOC_011634 NA coding downstream 149484 39967027 ~ 39971071 (+)
XLOC_011635 NA coding downstream 398894 40216437 ~ 40221377 (+)
XLOC_011636 NA coding downstream 600668 40418211 ~ 40424666 (+)
XLOC_011625 NA non-coding upstream 161567 39628522 ~ 39628821 (+)
XLOC_011624 BX469913.1 non-coding upstream 364176 39426092 ~ 39426212 (+)
XLOC_011637 NA non-coding downstream 668763 40486306 ~ 40493856 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000315_01773696_01782846 UBR1 coding CI01000315 null 1773644 ~ 1782846 (-)