CI01000147_00426318_00471016 (DYNC2H1)


Basic Information

Item Value
gene id CI01000147_00426318_00471016
gene name DYNC2H1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 426318 ~ 471016 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000147_00426318_00471016.mRNA
ATGTCTCGAGTGGACCGTGTGCTGAGCTCTCCGGGCGGGTCTTTGCTGCTAGCGGGACGTAGCGGCGTCGGCCGGCGCACGGCTACATGCGTAGTCAGCCACATGCACGGGGCATCTCTCTTCACTCCTAAAATCTCCCGCTCGTACTCGCTGAAACACTTCAAATCTGACCTCAAAACTGTCATGCAGTCTGCCGCTGTGGACGGCCAGCAGGTGGTTTTGTTGTTAGAAGATCATCAGTTTGTTCATCCGGCCTTCCTGGAGATGGTCAATAGTCTGTTGTCGTCAGGTGAAGTTCCAGGTTTGTACTCCACTGAAGAGCTGGAGCCTCTACTGTCATCTCTGAAAGATCAGGCGTCGCAGGATGGGTTTACCGGTCCGGTTCTCAACTATTTCTCCCAACGCGTTCAGCAGAACCTCCATGTGGTTTTGATCATGGACTGCACTAATGAGCACTTCACCATTAACTGTGAGAGTAACCCCGCCCTCTACAGGAAGTGCTCAGTGCAGTGGATGGAGGGCTGGTCCGACAGCAGCATGAAGAAGGTGAACAGAGAAACGGTATCAGTGTTGTCGTTTGAGCCACATCTCTGCACGTGGATGTTAAACTGCTCTCTGATTGGTTGTCTTTCAGCATCCGTGCATTCAGAGCTCTATCGGTCCTTCCTGGCGATCCATGAGTCGTGTCGGGAATTCGGAGCCACGCCTAGTCAATACCTGAGCTTCCTGCAGGTGTACCAGTCCATATACAGCTCCAAAAGGAAAGAGCTGACCCACAAACAACAGCATCTACAGGCGGGTGTGGCCAAGCTGAATGAAGCGAAGGCATTGGTGGATGAGTTGAAGAGGCGGGCGGCCGAGCAGAGCAGCTTACTGAAGACCAAACAGGCCGAGGCGGATGCCGCCCTGCAGGAGATCACTGTGTCAATGCAGAACGCCAGTGACCAGAAGACGGAGATGGAGAAGATCAAAGAGAGGATGGCACAGGAAGTATCCAAGATTGAAGAGCGGAAGAAGAAAATAGACGAGGAGCTCAGAGAGGTTCAGCCCCTGGTCGACGAGGCAAAGCAGGCAGTAGGGAACATCAAACCGGAGTCGCTGTCCGAGATCCGCTCGCTGCGCATGCCGCCCGATGTCATCAGAGACATTCTGGAGGGGGTGCTGAGACTCATGGGAACATTTGACACGTCCTGGGTCAGCATGAAGAGTTTCTTAGCCAAGCGAGGAGTGAGGGAAGACATTGTCACGTTTGACGCACGCAACATCACTCATGAAATCCGACAGAGCGTCGAAGAGCTTCTGCACAGAAACAAGGCATCGTTTGACCCCAAGAACGCCAAGCGTGCGAGTGCTGCCGCCGCTCCTCTGGCCGCCTGGGTGAAGGCCAACGTTCAGTACTCACACGTGCTAGAGAGGATCCAGCCGCTCGAGACGGAGCACGCCGGACTGATGGAAAACCTCCGCAAGACAGAGAACCGCAAGAACAGGCTGGAAAAGGAGCTGAACTCTGTGGGAGAGAAATTTTTGTGTGTGTACGACATCTCGTCTCTGGTGTCCAGGTTTCAGTGTCGTACGACTGAAGCAGCGAAACTGGAGTCTGAGGTGGATGAGATCAGTGAAGAGCTGGACACTCTTCCTAAGAGAGCTCAACTATCTGCTGCTTTCATCACGTATCTGCCTGCGGCTCCTGAAGACCAGCGGCGCAGCAGCCTAGACGACTGGATGAGCAGCTCAGGACTACAGAAGTTTGATTTGCGTCACTTCCTGTGTTCTGAGAGTGAGCAGCTGATCTGGAAGGGTGAAGGGTTGCCGTCTGACGACCTGTCGATGGAGAACGCTCTGGTCATCCTGCAGAGTGCTTCTTGTCCGTTCTTGATCGATCCATCCTCTCGTGCGACAGAGTGGTTGCGAACTCATCTGAAAGCACATCGTCTGGAGGTCATAAACCAACAGGATGCTAACTTCATGACGGTGTTGGAGTTATCCGTGCGCTTCGGTAAAACTCTTATCGTTCAGGAGATGGATGGCGTGGAGCCCGTCCTGTACCCGCTGCTGCGGCGAGATCTTATCGCACAGGGGCCGCGATACGTGGTTCAGATCGGAGACAAAGTCATCGACTATAATGAGGATTTCCGTCTGTTTCTGGCGACCCGTAACCCCAGCCCCTTCATCCCACCTGACGCTGCGTCTCTCATCACTGAGGTGAACTTCACCACCACGAGAGCAGGACTACGGGGACAGCTGCTAGCGTTGACCATCCAGCAGGAGAAACCAGAGCTGGAGAGCGAAAAAACGAAGCTCCTACAACAGGAAGAGGAGAAGAAGATACAGCTCGCTCAGCTGGAGGAGTCGCTGCTGGAGACTCTGGCAACGGCTCAAGGGAATATCCTGGAGAATAAGGAGCTGATCGAGTCTCTGAACCAGACCAAAGCAAGCAGCGCTCTGATCCACCAGTCGCTGACTGAATCCCACCGCCTGCAGACGTCACTCGACCAGGAAAGAGACGCGTACCTGCCGCTAGCCGAGACCGCCAGTAAGATGTACTTTGTGATCACGGATCTGTCCAAGATTAATAACATGTACAGGTTCAGTCTGGTGTCGTTCCTGCGACTCTTCCACAGAGCGCTGCAGACCGAACAGGAAAGCGAGAGCACCGATGTGAGGATCTCCACGCTGGAGATCAGTCTGAAGAACATGGTGTACGAGTACATCTGCCGCTCACTCTTCAAGGCGGATCAGTTGATGTTTGCGCTGCACTTTGTGAAGGGAATGAACCCAGAACTGTTCCAGGAGAACGAATGGGACGTGTTCATTGGCCTGATCGTTGGAGACATGGTTCGGAAGACGGACTCCCAGAAGTCTCTGCGGGAACAGTTTCCGTCTTGGATTGATCAGGAGAGGCTGATGGCTGTGGCTCTGCTCAAGAGCACGTTTCCAGTGTTGTATCAGTCTCTCTGTCTGAACGACGCAGACCTGTGGCTCACATTCTCACGCAGTTCCTGCTGCGAACAGGAAATCCCGCCTCCCATTGCCAAAAAGATCTCCCTCTTTCAGCAGGTGTTGGTGGTTCAGGCGTTACGGCCGGATCGGTTACAGAGTGCGATGGCAGCATTTGCCTCTCAAGCTTTGGGCATGAGGGAGCTGTCTCCTCCCCCGTTGAATCTGAAGCGTCTGTACGGAGAGACGCTGGAGTCTGAGCCCATCTTACTGATCATCTCTGCCGGTGCAGATCCATCTCAGGAGCTCCTGGATCTCGCCAGTCAGACCGTGGGCCGAGAAAACTACCATGAGGTGGCGATGGGTCAGGGTCAGGCTGACGTGGCTCTCCAGGCGCTCAGAGAGTGTGTTCGCTCTGGTGAATGGCTGTGCTTGAAAAACCTGCACCTCGTCACGGCGTGGCTCCCCCTGTTGGAGAAGGAGATCAACAGTATGAAACCCAAAGCTGGCTTCAGACTCTGGTTGACTGCTGAGGTCCATGTGAAGTTCACTCCCATACTGCTCCAGTCCAGCCTGAAGGTCACCTATGAGGCTCCTCCAGGGCTCAAGAAGAACCTGAAGAGGACGTATGAATCCTGGAGTGCAGAGCAGATCAGTAAAGGTGGTCACCTGACTCGAGCTCAGTCTCTCTTCTGCCTGGCCTGGTTCCACGCGGTGTGTCAGGAGAGACGCAACTATATTCCTCAGGGTTGGACGAAGTTCTACGAGTTCTCTCTGTCAGACCTGAGAGCCGGCTTTGAGATCATTGACCGTCTGTTTGAAGGTGGTAAGGTGTTTCAGTGGGAATTCGTGCACGGTCTCCTGGAAAACGCCATCTATGGCGGCCGCATCGATAACGTGTGTGACCTGCGGATCCTTCGCTCGTACCTACAGCAGTTCTTTAACGCTCAACTCCTCGTGCAGTCTCACACACACTCTCGTGTCAAGAAAACACACGCTTTCCCGGCTCAGATACACCTTCCCAACTCCTGCAGCATAGCGGATTATCGTGCGGTGGTGGACGCTCTTCCCGAAGACGACAGACCCAGTTTCTTCGGCCTGCCTGCAAACATCGAGCGCTCTTCACAGAGAATCATCAGCTCACAGGTGATCTCTCAGTTGAGGATTCTGAGCAGGTCTGTAGCAGCCGGCTCCAAATTCGACAGAGAGATCTGGTCTAATGCACTCTCACCCGTACTCAACCTGTGGAAGCGTCTCAATCAGGGTTCCTCATTGATCCATCAGAAGGTGGCTCTGCCCAGCGAGGGCGCCGGCTCTCCCGTTCTCTCATTCGTCCAGCTGGAGCAGTTTAATGGCATACGATTGGTCCAGAGCATTCACCAATCGCTGGCCTCGCTCAGTAAGGTCATCCGAGGCACGTCTCTCATGACTGCTGACGTACACAAGCTGGCCACTGCACTCCTGAACCAAGAGTGTCCGTTGAGTTGGCAGAATAAATGGGAAGGCCCTGAAGACCCGATGCAGTATTTGCGAGCCGTAGTGTTCCGAGCACTCGCGATTCAGGGCTGGGTAGAGAGGGCTGAGAGGGGTGGACTGCTGTCGGAGATGCTAGATCTGTCAGAGCTTTTCCACCCGGACACTTTCCTGAACGCCCTGAGACAAGAGACCGCCAGGTTGATGAGCTGCTCTATGGACAGTCTGAAGTTTGTTGCATCATGGAGGGGTCAGATTACTGAAGCCAAACTACAAGTGAAGGTTGGTGGTTTGCAGTTGGAAGGTTGTAGTTTCGATGGAAACCATCTGTCTGAAAGCCATCATGACTCTCCCAGTGTGTCTGCCGTCCCTGCATGTTACATGGCCTGGATCCCACAGAGCGCTGTGGGAAGTTATTCTCCAGACGAGTGCATCTCTCTGCCCGTGTACAGCAGTGCCGAGCGTCTGTGTGTGGTGACAAACGTGCAGCTGCCGTGTGCCGGAGATCATGACACGTGGATCCAGAGCGGAGCGGCACTCTTCCTCAAACAGCAG

Function

symbol description
dync2h1 Acts upstream of or within cilium assembly and intraciliary transport. Located in non-motile cilium. Is expressed in central nervous system; pronephric duct; and retina. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 3. Orthologous to human DYNC2H1 (dynein cytoplasmic 2 heavy chain 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000147_00426318_00471016.mRNA True 4965 mRNA 0.54 40 426318 471016

Neighbor

gene id symbol gene type direction distance location
CI01000147_00252331_00335060 GRIA4A, GRIA4 coding downstream 91258 248563 ~ 335060 (-)
CI01000147_00231088_00236774 AASDHPPT coding downstream 189544 231057 ~ 236774 (-)
CI01000147_00482393_00489991 DYNC2H1 coding upstream 11377 482393 ~ 489991 (-)
CI01000147_00491199_00512572 DYNC2H1 coding upstream 20183 491199 ~ 513215 (-)
CI01000147_00546348_00552951 NA coding upstream 73151 544167 ~ 552951 (-)
CI01000147_00586020_00603643 NA coding upstream 114832 585848 ~ 606212 (-)
CI01000147_00614373_00614621 NA coding upstream 142771 613787 ~ 617189 (-)
G356368 NA non-coding downstream 5940 419752 ~ 420378 (-)
G356364 NA non-coding downstream 6779 417635 ~ 419539 (-)
G356365 NA non-coding downstream 14378 399775 ~ 411940 (-)
G356348 NA non-coding downstream 82254 343220 ~ 344064 (-)
G356337 NA non-coding downstream 141969 263515 ~ 284349 (-)
G356384 NA non-coding upstream 111925 582941 ~ 584099 (-)
G356382 NA non-coding upstream 181671 652687 ~ 656083 (-)
G356423 NA non-coding upstream 198807 669823 ~ 670087 (-)
G356386 NA non-coding upstream 204181 675197 ~ 677479 (-)
G356274 NA other downstream 375419 48047 ~ 50953 (-)
G356249 NA other downstream 386476 14927 ~ 39842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016391 dync2h1,LOC106613214 coding CM030122.1 CM030122.1 18020039 ~ 18069565 (-)