CI01000147_00482393_00489991 (DYNC2H1)


Basic Information

Item Value
gene id CI01000147_00482393_00489991
gene name DYNC2H1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 482393 ~ 489991 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000147_00482393_00489991.mRNA
ATGGAGACGTTGTCCTTGCGTCCTGAGAGCATTGATGAGATTGGAGAGGCCAATACCAAACACAGCCAATTACAGGCCCAGAAACCTGAGATTCTGCCTCAGTTCCAGCAGGCGGAGGAGAAGAACAGGCTGTTGCGCTCCGTGGCGGGTGGAGGTCTGGACACCATCAGCTCCCTCAGAGCCAAATGGGACAAATTTGAGCTGGTGATGGAGAGTCATCAGCTCATGATTAAAGAACAAGTGGAGGTGATGAAAGGCAACGTCGAGTCGCGGGTGCAAGTTTACCTGCAGGACCTGCAGAAGTTCAGAGCCCGCTGGGACCAGCTCAAACCCGGGCATGACATCATCGAGTCAGGTGACCACGAGGCTCTGCAGCGGGAGGACTGCGAACACTTTCATCTGAGCCCTCCTGACATGTCTCTGGCTTCAGACACGCTGAGGGATCTGCAGGAGTGTTCAGAGATGTGGGAACTTTATGAGGAGTTTCAGCAGGGACTGGATGAAAACGCCGAGCAGGACTGGATTTCCTTCAGGAGTAAGACCCACGTGTTCGAGGAGTTTTTGTTCGCGTGGCACGACCGACTGAGGAAGCTGGAGGAGCAAACCAGCATGTCTGTCAAACTGCAGAAGGAAGTGGACAGATATAAGTCCGTAGTTCCAGTGTTAAAGTATGTGCGTGGTGAGCACCTCTCTCAGGAGCACTGGCTGGATCTGTTCCGGCTCATCTCTCTGCCCAGAGGAACCACACTAGAGAGACTGCAGTTCAGAGACCTGCTACGAGTGTCCGACAACATCATAGACAAAGCCCTGGAGCTCAAGGATCTGAACAGTCGCGCCCAGGCGGAGGTCACCATCCGCGAGGCCCTGCGGGAGCTGGAATTGTGGGGCGCCGGTGCGTGTTTCACCCTGACGGACTACACAGACAGTCAGGGCGGCTCTCTGCGCGTCATCAAGGACTGGAGGGACATGGTCAACCAGGTGGGCGACAACCGCTGCTTGTTGCAGTCGCTCAAAGACTCGCCCTATTACCTGCGCTTCCAGGACAAAGTGTCGCTGTGGGAAACCCGACTGGCCGACCTCGACGAGTACCTCCAGAACCTCAACACCATCCAGAGGAAGTGGGTCTACCTTGAGCCCATATTTGGCCGTGGGGCGTTGCCGCGGGAACAGGCCCGCTTTCAGAGGGTGGACCAGGATTTCAGGGCGATCATGTCAGACGTTCAGAGGGACAGCAGGGTCACGTCTCTCGCGACTCGAGCTGGAATCAGAAACTCTCTCGTCACCATATTGGACCAGTTACAGCGCTGCCAGAAATCCCTTAATGAATTCCTGGAGGAGAAGCGTTCTGCATTCCCTCGGTTTTACTTCATTGGAGATGACGATCTGCTGGAGATTCTCGGACAGGCCACAAACCCTACTGTCATACACACACACCTGAAGAAACTCTTCGCAGGCATCAGCAGTGTGGAGTTTGATCAGAGTTTTCAGAGCATCACAGCTATGAAATCACTGGAGGGAGAGACGGTGCCGCTCCAGAACACCATCAGCATCTCCAACGACGTGGAGGTTTGGCTGAGCGCTCTTTCCACAGAGATGAAAAACACCCTGAAGCATCTTCTGTGTGAGTGTGTGAATGCTGGGAAGAAAGGAAACTTGGACCCCACACGCTACCCTTCTCAGATTCTGTGCCTGGCAGAGCAGATCCAGTTCACAGCGGATGTGGAGAACGCCATACGCCAGCAGAGCCTCCATCAGCTGGAGCAGGAGCTCACCGCCAAACTGGAGAACTACACCAGTGTGGACACCAACACGGACGACACTGCAG

Function

symbol description
dync2h1 Acts upstream of or within cilium assembly and intraciliary transport. Located in non-motile cilium. Is expressed in central nervous system; pronephric duct; and retina. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 3. Orthologous to human DYNC2H1 (dynein cytoplasmic 2 heavy chain 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000147_00482393_00489991.mRNA True 1825 mRNA 0.55 12 482393 489991

Neighbor

gene id symbol gene type direction distance location
CI01000147_00426318_00471016 DYNC2H1 coding downstream 11377 426318 ~ 471016 (-)
CI01000147_00252331_00335060 GRIA4A, GRIA4 coding downstream 147333 248563 ~ 335060 (-)
CI01000147_00231088_00236774 AASDHPPT coding downstream 245619 231057 ~ 236774 (-)
CI01000147_00491199_00512572 DYNC2H1 coding upstream 1208 491199 ~ 513215 (-)
CI01000147_00546348_00552951 NA coding upstream 54176 544167 ~ 552951 (-)
CI01000147_00586020_00603643 NA coding upstream 95857 585848 ~ 606212 (-)
CI01000147_00614373_00614621 NA coding upstream 123796 613787 ~ 617189 (-)
CI01000147_00631877_00639420 MB21D2 coding upstream 140593 630584 ~ 639420 (-)
G356368 NA non-coding downstream 62015 419752 ~ 420378 (-)
G356364 NA non-coding downstream 62854 417635 ~ 419539 (-)
G356365 NA non-coding downstream 70453 399775 ~ 411940 (-)
G356348 NA non-coding downstream 138329 343220 ~ 344064 (-)
G356337 NA non-coding downstream 198044 263515 ~ 284349 (-)
G356384 NA non-coding upstream 92950 582941 ~ 584099 (-)
G356382 NA non-coding upstream 162696 652687 ~ 656083 (-)
G356423 NA non-coding upstream 179832 669823 ~ 670087 (-)
G356386 NA non-coding upstream 185206 675197 ~ 677479 (-)
G356274 NA other downstream 431494 48047 ~ 50953 (-)
G356249 NA other downstream 442551 14927 ~ 39842 (-)

Expression


Co-expression Network