G356249


Basic Information

Item Value
gene id G356249
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 14927 ~ 39842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU406141
GACGAGGCGAATGCTAACACTTTCACCAGTTGAAGCAGAATGTGACTCTGTAAACGATCGTAAATGAAAGGCAAACGTGGATTTTTTTTTTCTTTTGGATGCCGTATATTTCCAGTCTGCAGGTGAGAGTTGTTTCCAAATTACAGATTTTGAATGAATGATCCAGTGACTAACTAACTTGTTCCAGTACTGGAAGCATCAGCGTTTTTGAACCAATCTCTTGAATTAATTGATCTTTAACGATTTGATGAGAATAGCACATAACAACAACAACAACAACAAAACATGTTCTGATAATTAGCAAATTAATAGTCTAACAAAATAACAGAGCCATAACATTTAACTGAGCTGCTGACCCTGTTGAAAAAACCAGCATATGCTGGTAAGGTAGGTTTTGAAGCTGGTTTGAGCTGGTTTATGCTGGTCAAGTGCTGGTCCTAAAATGGTCCACCTTACCAGAATATGCTGGTTTTTTCAACAGGAGAAAAGCTAATCTCATTCAACAGTCCCTGTTTTCACCTCATTCATTATGGTGATGTCTGAGATCTTCTGTAAATTGGCTTATCAAACATCAAACTCTAGGATCATCACTGTGATAATCACATATCGTAAGTTTTACCCCTCGGGTTAAATACATGACTAAAAATGCTATTATAGGATTAGTTCACTTTAAAATGAAAATTACCCCAATCTTTACTCACCCTCAAGCCATCCTAGGTGTATACGACTTCCTTCTTTCAGATGAACACAATCAGAGATATATTAATAAATATCCTGACGCATCTAAGCTTTGTAATGGCAGTGAGTGGGACCAATGAGTATAAAGCTCCATCCAAAGCAAAACTTACTCCACACGGCTCGTTAAAATGCAACATCACTTACACTTTCTTCGTAAGTTGAATATGGAAGGTGGTCTGGTGGAAGCTAGATATTTTACTTTATAACTTGTTAAATATGGATATTTTTCTTACACAAATGAGTCGTTTCACTTCAGAAGGACTTTACTAACCCCCTGGAGCCGTGTGGAGTACGTTTTGCTTTGGATGGATGCACTTTCTTGAGATTTATACTCGTTGGTCCCGTTCACTGCCATTATAAAGCTTGAATGCGTCAGGATATTTATTAATATAACTCTGATTGTGTTCATCAGAAACAAAAAAAGTCATATACACCTAGGATGGCTTGACCGAACGCACGATCGCTGTCCAGTACTCTTCTTTGTGTGCGTTTGAGTGTGCAGTTAAAAACTTAGCTTAGAGCGCCATCTGCTGTTAAAACTAAGCTCAGAATCGATTAGAGAGAGAAAATATCAGAATCAATCCAGAATCATTGTTTTGCGATTCTCAATTTGCGAATCCATGTATTGTCCCAGCCCTACCATTCACATGATTAGTGCAGATCTGAGTTTTTATTTGAATGTATAGGGAAATGTTTGTCTTCATAAAAGTTTTGATGGCATCTTCTTTATTTCTTTACTCAGTATGATGCCTAATAAAGTAGTGTTTATAAGCACAGTGCTGCTTGTGTTCAGGAGTAACCGCTGTATTTCTGCTTTTCCATAAGTGCCACCTTCTGTGTACTTTCGTTCAGCCTGTCTGCCATTTTTGTTCAAATAAGAACATTACATATATAATCATTAATTAGGCTCAAATGTGAGGTTTATCATTCTATAAGTTTTTGTTTTGCCAAAACCAGGGGCAACCAGCCTAGGCCCACCCAGATTGACAGTAAGTTGAATACGGAAGGCGGTCTGGCGGAAGCTAGTTATATTACTTCATAACGTGTTAAATATGGATATTTTTCTTACACAAATGTATCACTTTGCTTGCAGAAGGCCTTCATTAACCCCACAGAGCCGTGTGGAGTACGCTTTTGATGGATGCACTTTTTTGAATTTCAAACAGGTGGTTTCCGTGCACTGCCATTATAAAGTTTTGGAGCATCAGGGTGATTATTAATATAACTCTGATTGTGTTCATCGGAAAGAAAGAAGTCATATACACCTAGGATGGCTTGAGGATCTGGTCCTGTGGGCGTCAGTATCACACAGTGATCACAGTTCACACCTGCAGTGAAGCTCCTCCCACAACAATTCACCAATAAATACTGGGAATATTCACATCATCCTACAAGAGAAGGACAAACTCCAGGTGTAGCAGCTGAAATCTGTGTGACTGTTAAAGATGGAGTTTATTAAAGAGGAGATTGAAGACACGAGTGATCCAGAACCATCCAGAATAAAACATGAAGATACTGAGAAACAAATAGACTGGATGGAGATGAAACCGCGAAAACATGAACTGAATAAAGTGGAGGAGGAAAAGCAGAGCATCGAAATTCAAAGAACAAAAGATAATAAGCCGTACACCTGCCCTCAATGTGGAAAGAGTTTCAGTCGCAAAGGAAACCTTAAAACACACATAAGAATTCATACTGGAGTGAAACCGTATACATGCACTCAGTGTGGAAAGACCTTTGCTTCTCAATTAGGCCTCAAATTTCATCTGCGCATTCACTCTGGAGAAAAACCATTTAACTGTGATCAGTGTGGTAAAGATTTTATTTCGGCATCAAATCTAAAACAACACCTAAAAGTTCATTCAGGTGAGAGGCCTTATGTGTGTTCTCTCTGTGGAAAGAGTTTTTCAAGGATGGATGGTTTTAAACTGCACCAAAAAACACATAATGAAGTGAGAGATCATGTGTGCTTTGACTGTGGGAAGAGCTTTACAACAGCTGAGTATCTGAAACAGCACCGAAGAATTCATACTGGAGAAAGACCTTACAAGTGCTCATATTGTGACAAGAGTTTCACTCAGTCTCCACACCTGAAATCGCATGAACGAGTTCATACTGGAGAGAAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU406141 True 2866 TUCP 0.39 4 14927 39842

Neighbor

gene id symbol gene type direction distance location
CI01000147_00231088_00236774 AASDHPPT coding upstream 191215 231057 ~ 236774 (-)
CI01000147_00252331_00335060 GRIA4A, GRIA4 coding upstream 212305 248563 ~ 335060 (-)
CI01000147_00426318_00471016 DYNC2H1 coding upstream 386476 426318 ~ 471016 (-)
CI01000147_00482393_00489991 DYNC2H1 coding upstream 442551 482393 ~ 489991 (-)
CI01000147_00491199_00512572 DYNC2H1 coding upstream 451357 491199 ~ 513215 (-)
G356274 NA non-coding upstream 10659 48047 ~ 50953 (-)
G356275 NA non-coding upstream 13633 53475 ~ 60016 (-)
G356276 NA non-coding upstream 23968 63810 ~ 64036 (-)
G356281 NA non-coding upstream 37650 77492 ~ 77718 (-)
G356261 NA non-coding upstream 42305 82147 ~ 109196 (-)

Expression


Co-expression Network