G356365


Basic Information

Item Value
gene id G356365
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 399775 ~ 411940 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU406307
TTCACGGTTTTTCCGGCACTGCAGCTGCAGGAGTTCCAGTTGTCGGTGCCACAGGCGCAGTTTCCCCCACAGCGCTGCACCAGGAGGCATCGTGGGAAAAACACGGCGTTGGTCACCTTCAGCTCCTCGCGGAGATTCACCGAGAAATTGCGCGGAGTGCAGCTGTACTGCTTCACGTCATCGTAGAGACGGTCGAGATCAAGCTTGTGTTTGCGGTCGGTGTGGTAAGCTCGTGGTCTGTAGTAATGTGTCTGTGTGTACAGTTGCTCCAGGTCTTCCTGCCAGGTGAACGGATTCAGGTGTCTCAGTAACTCTTCCACCGTGCTGACACTGGCGATATCGCTGTCCAGCGCGGCCGCAGACAGCGGGGTGTCTGTCCCAGAAATCCCCCCCAGATCTGACGTCATTGTAACCGCTTCCCAGTTGGTCAGAGATGCAAGAGGTGAGCTGTCCAACAGCGAATAGCAGATTTTGAATCCTGGTTTTGCTACGAAGTAATCGTCCGATTTGAAGGTGATTTTGATGAGGTTTGTTTTGGATGTGATCCGTGATGGAGATCTTTGACCGCACCAGCGGCCCCAGATGATTGTGCTGGTTTCTGAAATATCCTCCACTTCCACATAATCATACCTGCAGACTCCATTCTCCGCCTCTTCCAGTCCAAACTGAGCGTCGAATTCCAGCAGGATTCGTGTGTGGACAGGCGAGAGCAGTTTCCATGACAACAGCAGGTTGCGAGGGTATGAGCTGGGGAAGCGCGGGCTCTGGACGTGACCTCCGCTCTTGACCATTATGACCTCTTCCTTCCGGTACAAGTCTGTGAGGCGATTGCTGTCTGTTACTGGTCACAACTTGGACAGGTTAGTGCGTTTACTCTCGGAGACAAACAAACACACACAGATATAAACAAATACAACACATACAAAGGTCAGAATCTGTCCCATTTCAGTTCATCCCAGTTCAGTTTGGAGAACAGGATAAATTCAGCTCAGAAAATAAATCTAATTCTCTTCAGGAAAATAGACTAACTCACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU406307 True 1034 lncRNA 0.51 5 399775 411940

Neighbor

gene id symbol gene type direction distance location
CI01000147_00252331_00335060 GRIA4A, GRIA4 coding downstream 64715 248563 ~ 335060 (-)
CI01000147_00231088_00236774 AASDHPPT coding downstream 163001 231057 ~ 236774 (-)
CI01000147_00426318_00471016 DYNC2H1 coding upstream 14378 426318 ~ 471016 (-)
CI01000147_00482393_00489991 DYNC2H1 coding upstream 70453 482393 ~ 489991 (-)
CI01000147_00491199_00512572 DYNC2H1 coding upstream 79259 491199 ~ 513215 (-)
CI01000147_00546348_00552951 NA coding upstream 132227 544167 ~ 552951 (-)
CI01000147_00586020_00603643 NA coding upstream 173908 585848 ~ 606212 (-)
G356348 NA non-coding downstream 55711 343220 ~ 344064 (-)
G356337 NA non-coding downstream 115426 263515 ~ 284349 (-)
G356294 NA non-coding downstream 182327 212997 ~ 217448 (-)
G356325 NA non-coding downstream 197427 201193 ~ 202348 (-)
G356364 NA non-coding upstream 5695 417635 ~ 419539 (-)
G356368 NA non-coding upstream 7812 419752 ~ 420378 (-)
G356384 NA non-coding upstream 171001 582941 ~ 584099 (-)
CI01000147_00614373_00614621 NA non-coding upstream 204280 613787 ~ 617189 (-)
G356382 NA non-coding upstream 240747 652687 ~ 656083 (-)
G356274 NA other downstream 348876 48047 ~ 50953 (-)
G356249 NA other downstream 359933 14927 ~ 39842 (-)

Expression


Co-expression Network