G356368


Basic Information

Item Value
gene id G356368
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 419752 ~ 420378 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU406313
TCTGAGCAAAATGCTACAAAATGATGAATATAGACTGCATCAGGTGTGTTTTGGCAGGTTTTTATTTAATTGATAAAGGTGAATAGTTATGTATTGCACAATAGTATGATATTTTGTACATGCAACTTAGCTAGTTTACTGTAAATAATAATGTCATTTAACTCAGTTTACCGCCATGTTTTCTCACGCCACGGCCCATCTCGGAATTTAGGACGCAAAGAAAAATTCGTTTCTCACTCATAATTACGGATGTGTGGTGGCGCTCGCAATCGTTCTGCTCCGTGATAACGAACGCAAGTTAAAGGTAGGGTAAGCAATTTTTTTGTTATACTAGTTGAAGCTCTCTTCACATCCTGATAGCTATAAATATTAGAAGTGGTCTAAATCTTTTGTGGAAGTCTCAGGACCAAAAAATTATTTGACTGAAGGACTAAATGCAATGATATGATGTCCTACCTGCCTGTCAACATATGCATTTCCATACCTCTGCCAGTGTTGCCAAGTCCTCGGTTTTCCCGTGGAATTGGGCTACTTTAACACTGTTGCCGCGGTTGTTGTTTTCCATGTCCACGGGTTGAAGCGACCCCAAATAACATGATATTTACCCCTTGGAATGCAAATTTTACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU406313 True 627 lncRNA 0.39 1 419752 420378

Neighbor

gene id symbol gene type direction distance location
CI01000147_00252331_00335060 GRIA4A, GRIA4 coding downstream 84692 248563 ~ 335060 (-)
CI01000147_00231088_00236774 AASDHPPT coding downstream 182978 231057 ~ 236774 (-)
CI01000147_00426318_00471016 DYNC2H1 coding upstream 5940 426318 ~ 471016 (-)
CI01000147_00482393_00489991 DYNC2H1 coding upstream 62015 482393 ~ 489991 (-)
CI01000147_00491199_00512572 DYNC2H1 coding upstream 70821 491199 ~ 513215 (-)
CI01000147_00546348_00552951 NA coding upstream 123789 544167 ~ 552951 (-)
CI01000147_00586020_00603643 NA coding upstream 165470 585848 ~ 606212 (-)
G356364 NA non-coding downstream 213 417635 ~ 419539 (-)
G356365 NA non-coding downstream 7812 399775 ~ 411940 (-)
G356348 NA non-coding downstream 75688 343220 ~ 344064 (-)
G356337 NA non-coding downstream 135403 263515 ~ 284349 (-)
G356384 NA non-coding upstream 162563 582941 ~ 584099 (-)
CI01000147_00614373_00614621 NA non-coding upstream 195842 613787 ~ 617189 (-)
G356382 NA non-coding upstream 232309 652687 ~ 656083 (-)
G356423 NA non-coding upstream 249445 669823 ~ 670087 (-)
G356386 NA non-coding upstream 254819 675197 ~ 677479 (-)
G356274 NA other downstream 368853 48047 ~ 50953 (-)
G356249 NA other downstream 379910 14927 ~ 39842 (-)

Expression


Co-expression Network