XLOC_011638 (slc4a1ap)


Basic Information

Item Value
gene id XLOC_011638
gene name slc4a1ap
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40879331 ~ 40903365 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023124
GGAAGGGAATTATTAAGGTGTAACACCAAACACACCAGAACGCGTTGAGCGAACAGTGTTCGCCGAACGCACGATGGAGTTTGATGGCAGCGAACTGACAGAAAACATTCCCACTGAAACGATGAAAACGGAGAAAAGCCAGGACCCAGAAAATGGAAAAATCTGCGATTCTAAACAAGACATCACCAGCACAAACGAAACCGCTGACGATCCGTTTAAGAAACCCGTACTGACCCCTTCTCTCGCGGTGAAGAAATCATTAGGACCCAGTAAGAAGCCTACAGAAGAAGTGAGCAGCAGCGTATCAGAAAATACAGACGCAGATCATGATACTAAACACCTGCTGTCAACTGCAAAGGCTAAAGACACAAAAATAGACCCATCGGATCATCCGCCATCCGAGAGATTAAAGGAACCGAGAGTACAGCCGAAATCAAAAGACATCAGACCCAAGATCCCTCCGGCTGGTAAATTCCCTCCGCTCCCGTACACCGAGCCCCCATGGGGAGCTGTCCCTGACATCAACTACTCGTTTGAACTGCTGAAAAATGGAGCTATCCTAGACACCGTCCCGCTGACCCACAGGAGTTATTTTGTGGTGGGTCGGTTGCCTGTGTGTGATGTGTCTCTGGAGCACCCGTCCATCTCTCGCTATCACGCCGTGGTCCAGTACCGGGGCAGAGCCGGGCAGGAAGGCGTCGTGGGAGAGGAGAGGGGCTTCTACGCTTATGATTTAGGCAGCACCCATGGAACCTTTATCAACAAGAACAAAATACCACCTAAAACATACATAAGACTCCGAGTGGGGCATGTTCTAAAGTTTGGGGGGAGCACACGACTCTTTATCTTGCAGGGTCCAGAATTTGATGAAGAAGCCGAGTCGGAAATGACAGTGACAGAGCTCAGAGAGCGTGCTAGAAAACAGAGGGAAGAGCTGGAAAGGAGAATGATGGGGGATGGCTCAGATGAGGAGGAAGAGAAAGAGGAGAGTGAAACCAGTGCTTCAAAAAACACCTCAGAAGATGCTGGCTGCTCTTGGGGAATGGCTGAAGAGGCAGCTCCAGAAGAGGATGATAATGAGGAGAATCCGTTTGCCACCGAATTTCAGGAGGATCAAGAAGCAGCTTATTTAAAAGATCCTAAAAAGGCCTTGCAAGGTTTTTATGACAGAGAAGGAGAAGAATTGGAGTTTGAATATGAAGACAAAGCCCATGGCACCTGGCTCTGCAGAATTAAGTTACCTGTGGATGATGCTGTGGGCAGGCAACTGGTAGCTGAGGTCACTCACACAGGGAAAAAGAAAGAAGCGGCAGTTCAGTGCTGCCTGGAGGCCTGTCGTATCTTGGAGGCCCGTGGCCTTTTGAGACAGGAGGCAGTGTCTCGCAAAAGGAAGAAGAAGAACTGGGAAGATGATGATTTTTATGACAGTGATGACGACACATTCCTTGACCGGACAGGTGTAGTGGAGAAGAAGCGAACAGAGCGGATGAAAAAGGCCGGAAAGATTCAAGAGCGTCCTGATACATATGAGTCACTTCTAGCCAAGCTGGCTGATGTTGAAAAAGAGCTGGCTGACACCGAGAAAAAGCTAAATTTATCTGGGAAAGGAGGCTCCGGTTCATCCACCGAGGATCCTCTGGATGCTTTTATGACCGCTGTACGGAGCGAGGTTGCTCTGGATGGGGTGGAAAGAAAGAAGTTGCACTTACATATAGCCGACTTAAAGAAGGAAGGTCAGAGATTGAGCAGGCTAGTGGAGCTGGCTAAACCCACACAGCTGCCTTCATTGCTGTCTAGCGGATCTCATACTCAGTCTTCAGACTCCGACAAACCTAAGAAATTATCTTTACCGATGTTTGGAGCCATGAAAGGAGGGAGTAAATTCAAACTGAAGACTGGAACTATTGGAAATTTACCACCAAAGCGGACAAGTTTGCCTCCAGAGCTCTTCACTATGAAGGAAATGCCCCCTGGTGGTGAAGAAGAGGTAGAGGAGGAAGAAAACAGCGAGGCAGAGGATGTGGTCACTGATGGGGACATGGAGGTTATACAGTCTGTAGAGACAGCCATCTCAGAACACTCTGCAGACAGTGCTGAGTCTCAGACACAACAACCTAAAGAAGAGCATGAGGACCAGCCTGCTAAGACAGTGATTTCTCCTAAAAAAGATGACCCTTCTCCAAAAGGAGTTAACAACAAAGCCTCTAATGTCCagaatccaaagacatgcgcaaagAAGAAAGTTATTGGCCCAAGCAAGCCTCCTGTGACCATGTCCAAGCAGTACCCAGAGGACGACCCAGACTACTGTGTTTGGGTTCCTCCATCAGGTCAGACTGGTGATGGTCGGACACATCTGAATGATAAGTATGGATACTGAAAACCGAAAAGGGGAGGCCATCTTCACTAAAATGGAGTCAACTCAACATTCATTCTAGTCCagtggtcttaaactcaattcctggagtgccacagctctgcatagtctAGCTTCAACTTTCTTCAACGCACACCTGCTTTAAAGTCTTGagcaccttgattagttggatcagctgtgtttgattagggtttgaccaaaactgtgcagagctgcagccctccagaaaTCGAGTTTGAGGCACATGTTCTAGACTTCGAAAAGTGAACATCATTTTCTCTCTGCATCTGCGTTTTCACTCCATACAAGGAACATCGAGGAACACAAGCAGCACAGATGAGCTCAGATGTTATTTGGACATGGAAACTGATTTTCACATCATGCGATTTTCATTCGAATGCATTCATTTTCCACAACTGGCCTGTTAGCCAAATGTCTAGGATGTTTTTGGGAGAGTTTTGGAGTGGACAttgcttaaagggttagttcaccacaaaaataatgaaaattatgttattaattggTAATCCCCATGTCTTTTCAAATCtttgagaccttcattcatcttcagtacacaaatgaagttatttaggtgaaatccgagagctccctcatctTCCATAGACTGCAAGGTCCCCTATTTGCTGAAAGTTCAGAAAAGAACCATCCTCAAAACAGATCATACACTGTAATAAACAGTAAATCCTTCTctttaaaagtgacaagttgattttactttaaacatttaagtaattCTTAAACCGGTTAAGTTCACTGAACTTGTTTGTTTAGATTTAGGCACATAGCTCTTTTACCTAATAAATTCAAGGCAGTTTTATActataaaaagtgattagttgaaaaagtgagtaaacacattgccttcaaattattgagaaaatgagctatgtacttttaaaaacaagtaaatgTAACACTTCTAAGTGTTACAACAGaaatacttaattattttttaagtaaaataaactttattaagtaattgctttttacagtttgCATTCAGTGCTTCAATTGGAATATTATCAGATTATGAGAAAACGTTATCGCAcacgtaaaacaaaaataactactTTCTAAAAAAGTTTTCTTATTTTCAGTGTCAGTTTTTTGTGCACATTCAAAAGTCTTGTTTCTCGCCCGTGACCATGTCCAAGTACCCAGAGGATGACCCAGACTACTGTGTTTGGGTTCCTCCATCAGGTAAACATATACTTTTCTTCCCCCTTGTTGATTGTGATgatattaaaggaatagttcacccaaaaataaaaattcactcactatttactctccctaaaGTGATTccaaatctttgagtttctttcttctgctgaactctaaagatgatgttttgaagaaagctgaaaatctgtaaccattgacttatcgcacacatataacaaaaataacaaattattcaACATTTTCTTATTCTTAGTGTGAGTATATTGTGCGCATTGAAAAGCTCCAGTTCCGAGCGCAACTCTCTCTGTTTGAAACAAAGCACAGGCGTATCTGTGGTAAGCATGATATGTGAGTGtgcgccctatactgacactgagaaactttaatcaaaaaaatatttttgaattttgTAGCTTGATATTATTCCGATTGAACTACGGAAGGCGTATAGATCTATTTTGAGGACTCTTTTTAGTACCTCTCTGAAAATGTAGGATGAGGAAGCTCTCGGTTTAcacctaaaatatttttaattgtgttcTGATCAACTTGAGTAGGAGTAATTAAtgacatttcatttttgggtgaatttatGCTTAAAGGTTTGCAAAAATGTCTGTTTTCAGATCAGCATTTACTTCCGCATACTGTCCTATAAGCTTGCAAATCAAAAACTTTCCACTGGTTGAGAAGTACTAATTTTTCAAACTGTATTTtggatttatttgttgttttgcaGTCCCGATTCTGAGCGCAACTTTCTCTGTTTGAAACAAAGCACAGGCATATCTGTGATAAGCATAATATGTGAGcgtgcaccctatactgacactgaggatgAGGGAGCACTCGGTTTACacctaaaatatctttaattgtgttttgagcaACATGAGGTGGGAGTAATTAATGACATcatttcacttttgggtgaactaacaatTTAAGATTTGCAAAAAGGTCTATTTTTAGATCAGCACTTCCGCATACTGTTCTATATGCTAGCAAATTAAAAATGTTCCATTGGTGTAGAAGAACTAATTTCTCTGAATCtgatttttttgattttatttgttgtttttctgcTCTTTCagatacaatatattttattttgactttatatTTTCTTAATGACAATATCATGTCAGTTGTTTGATCACTGTCATTGGTGACAAAAATCTCATGTCACAATTTTCTGTTCTTGGATCATTTTAATAAGCTTAAATgaaaagttcacacaaaaatgaaaattcactcactatttactctccctaaaGTGATTCCAAATctttgagtttgtttcttctgctgaactcTAAAGACgatatttttgaagaaagctgaatgtctgtaactattgacttatcACAcacatataacaaaaataataactttattcaacattttctttttctcagtgtcagtatattgtgcgcATTCTAAAGTGCCACTTTCAAGCAAAACCTTCTCTGTTTGAAACAAAGCATGGGCGTATTTGTGGTAAGCATGATATGTGAGTGtgcgccctatactgacactgaggagaagaaactgtcaatattatttgtgttttttagctTGATATTATTCCGATTGATCCACTGAAGGCATAATGACCTGTTTCTGAGGAGTTTTTTCAGTACTTCTCTGaaaatggaggatgagggagctctcgttTACACCTAAAGTTTCttaaactgtgttttgaacaaCGTGAGGGGGAGTAGTTAAAgaaataaatttctttttttttttggtgaactatcactttaaggttTGCAAAAAGGTCTATTTTCATTGTTGTTTATATCAACATTTACTTCCGCATACTGTCCTATATGCTAGCAAAACAAAAATGCTCCACTGGTCTAGAAGATTTCTCAAACTgtattttggatttatttttatttttttgctgttcttTCAGatacaatatatttcattttgacGTTATATTTTCTTAATGACAATATCATGTCAGTTGTTTGATCACTGTCGTTGGTGACAAAAATCTCTAGCCACAAATTTCCGTTCTgggatcattttaaataatcttaaagggacagttcacacaaaaatgaatgtACTCATCTACAGGTCATTTGAGATCTAGGTGCCCTTTCTTTCTTCAGTAGATCATTAAAGACTATTTTTCTATCAATCTGTTGTGAATCTTTTAATGGCAGTCAATGGGGACAGTCttttgagattaaaaataaacacgtaCAAACAAGTCCAAATCAATAGCCATGGCTCCTGATGACACAGAGGTCCTCTGAAGCCAAACAATCAGTCTGTGGACATTATTTACAAGATTAGCTTCAATCCACAGCTTGGTCGAACAGATCTTGGCGCGATTATGCGAATGTAGTCCAGTTGTATTCCTGTTGCTTTAAACCTTTCAGACCCTGTAACGTGTCAGGTCATGTTATTTTCACAGGGCATTTCTCAAAATTTAAAGCCTGCTGTACATAATCAATTCATATCGGAGATTTTGTCACTAATCCTCATGTATTTGTCATCAAAACGTCAGGACTACATTTAGACATGCTGTGAACAGTTTGACCAGGCTGTGGATTAAGATTCataataatgtaaatactgtTTAATTTTTTACACAGAGTGATCGTTTTACTTTAGAAGGCGTCAATGTGTCATCAGAAGCCATGGCTATTGATTTGGAGTTGTTTGTAtgtctttatttttaatctacCACCATTGAAAGCATTATACGGATCTACATATGGATGACCTATTGGGGGAGTAAGTTaacaggaaattttcatttttgggtgaactatcccataaAGCAAACTCATTGACCACTCCGTTGGCTGTTTGGTCATCCCTGCACACActccctgctctgattggctgagtgGACACACACACTGTATGGCAAGAGCTCGCTTTTGGATGCAGTTCTGTTGACTACTAACGATGCCTCCTCAGAGAGAGGTGGCTTTACCAGCCATCTGGACACTTCCTTGGCATTCTAGGATTGGGAGCAAGCTGTTAATGAATCAgtccgtctgtgtgtgtgtgtttgcataaaaGGCAGTGAAAGTGAGCTCTGTGCACATCATTTGTGTGTATTCGCTGTTTCTTCATATTAATGAAGAGTGACTGTTGGTGATGTGTGAGAGTGTGAGCTGGCTTGGATTTTTTTAGGCCTACTTATTCACTGGTCTCTCTCAGTTTGTCCATCACTTTTAGTTCTATTGAATTCTCCATTTGCTTGGAgactttttgtattttgtgtgtatGTCTACTTAAATAGACATTTTGCTTCTGTCTCTAA

Function

symbol description
slc4a1ap Predicted to enable mRNA binding activity. Orthologous to human SLC4A1AP (solute carrier family 4 member 1 adaptor protein).

GO:

id name namespace
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080521-2 Predicted to enable mRNA binding activity. Orthologous to human SLC4A1AP (solute carrier family 4 member 1 adaptor protein).

Ensembl:

ensembl_id ENSDARG00000034160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023124 True 6884 mRNA 0.40 14 40879331 40903365

Neighbor

gene id symbol gene type direction distance location
XLOC_011637 NA coding upstream 385475 40486306 ~ 40493856 (+)
XLOC_011636 NA coding upstream 454665 40418211 ~ 40424666 (+)
XLOC_011635 NA coding upstream 657954 40216437 ~ 40221377 (+)
XLOC_011634 NA coding upstream 908260 39967027 ~ 39971071 (+)
XLOC_011633 UBR1 coding upstream 1010896 39834947 ~ 39868435 (+)
XLOC_011639 NA coding downstream 86608 40989973 ~ 40999861 (+)
XLOC_011640 babam2 coding downstream 178147 41081512 ~ 41266561 (+)
XLOC_011641 fosl2 coding downstream 399295 41302660 ~ 41318547 (+)
XLOC_011642 mocs1 coding downstream 433881 41337246 ~ 41368830 (+)
XLOC_011643 insm1b coding downstream 560577 41463942 ~ 41466145 (+)
XLOC_011632 NA non-coding upstream 1049093 39825535 ~ 39830238 (+)
XLOC_011644 NA non-coding downstream 571786 41475151 ~ 41478637 (+)
XLOC_011645 BX511195.1 non-coding downstream 856443 41759808 ~ 41759925 (+)
XLOC_011646 NA non-coding downstream 858820 41762185 ~ 41763364 (+)
XLOC_011649 NA non-coding downstream 1379489 42282854 ~ 42286980 (+)

Expression


Co-expression Network