XLOC_011646


Basic Information

Item Value
gene id XLOC_011646
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 41762185 ~ 41763364 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024739
AAATACTTAAGTTGAGCAGACTTTACATTTTGAGTTCTTCACTGGATCATCTACTTCCCGTCTTTGCACATGCTCAGTCTGTCTTCGGGTGCCATTTTGCATGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGTAAGCTTTGTTTTAGCTTTATTATCAAAATTAATCTAAATAGCGTGCAAAtctaaagtaaaatgtaatgttatgttcCCAAAAAACTAAGTTACATCGTGTGAAGATCATTTCTGACAAGCTCGGGCTAACAAGCTAGCCACCTGTGAAGTTTGCTTCATTTGAAGGACTGTTTAACGTTAATTTGCTTCTTAAACTGGAGGGAAATGTAGTGAAATATTGTTGTTGCAAACAGACATATCTGAGCGGCCGGTCACCACTGTATTGTTAACCCTGTTGTGTCTGTATTAAAACAGCAATGCgataacattaacattattttatgattatttagtTGGCATACATTAACCATTTATGAGTTAAgtaacatgtatgtatgtattatttaaatcttctctttttatgtttgcaatatttattttatattgtgctttttaaaaacatcagtttaatttatgaaaacaatttgacctgcaatgttacatttttatttacttttttataggtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAATTTACACTACTGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTGTAGGTGCATTAAAATCACATTTGACATTAGCACATTAACAGTCTGCTGCAGTTACTgactatttgatttttttatcctCCTGTAGCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGCAAGTTTGCATTTgagattatttatttcaaaatgtattaccCTTGTTCACAATTCATACTATTCATTTTTTATGGTCTGTTTGTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGGACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATT
>TCONS_00023134
GCATGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGgtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAATTTACACTACTGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGGACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024739 False 1180 lncRNA 0.35 1 41762185 41763364
TCONS_00023134 True 404 lncRNA 0.43 4 41762283 41763364

Neighbor

gene id symbol gene type direction distance location
XLOC_011645 BX511195.1 coding upstream 2260 41759808 ~ 41759925 (+)
XLOC_011644 NA coding upstream 283548 41475151 ~ 41478637 (+)
XLOC_011643 insm1b coding upstream 296040 41463942 ~ 41466145 (+)
XLOC_011642 mocs1 coding upstream 393355 41337246 ~ 41368830 (+)
XLOC_011641 fosl2 coding upstream 443638 41302660 ~ 41318547 (+)
XLOC_011647 kiz coding downstream 228690 41992054 ~ 42045253 (+)
XLOC_011648 pax1a coding downstream 510876 42274240 ~ 42278340 (+)
XLOC_011649 NA coding downstream 519490 42282854 ~ 42286980 (+)
XLOC_011650 NA coding downstream 588121 42351485 ~ 42353357 (+)
XLOC_011651 NA coding downstream 697750 42461114 ~ 42461336 (+)
XLOC_011639 NA non-coding upstream 762324 40989973 ~ 40999861 (+)
XLOC_011637 NA non-coding upstream 1268329 40486306 ~ 40493856 (+)
XLOC_011636 NA non-coding upstream 1337519 40418211 ~ 40424666 (+)
XLOC_011652 CR925755.1 non-coding downstream 706524 42469888 ~ 42502094 (+)
XLOC_011656 NA non-coding downstream 1480506 43243870 ~ 43247075 (+)

Expression


Co-expression Network