XLOC_011649


Basic Information

Item Value
gene id XLOC_011649
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 42282854 ~ 42286980 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024740
caagaataaaaaaaattgtgcgcATGCAAAATTTTTTGGATATGGATAATCttctataaaaatgaaaataatttagacTTGCTTGACCTTCTTACAACTATTTTTAACATTCAAAATTTAAAATTCAGGTCTAGAGTTATGCCAACCTATTTttcaataactttatttttaaacagcacCTCAAATTCATCCCTTGCAGGCTATTTCATACGCTGATAAAATGATTCTGAGTGTTTGTAAATATTATGAGGTTTAATTAGTGAAAtctacaaaaaaatgtaagtttgtagctttacataaacaaatgtAGTTTAGAATTCATCAGGGtttgttcaaaacacaaaacattgggcatttttttttttatcagtttttctGAGTAATCTCAGACAAACATTTTTTGTACTCGTAGACAACATAACATAACCTTGTTAAATTAACTAAGTAACTATTCCCCTTTGTCTTTGACTGGGAAACCCCAATTGAAAGAAGAACATGCGGACGAAATAAGGACAACAGCATTGACTCCAGAAGACAAACTGTTATCAGAGGCTTAATACTCttccttggtaaaaaaaaaacagagtttaTCGAAGACTAccaggTTTAAGATGACAACGATTCCATAACCATTCAAGAGCACGACTGTTCACTTGTTCCCAACATCTTTGTGGACAACAAATCCAGGGGATGAAGGTCATAAGAAAGCTGAAATAGCCATAGAGAGGGCAAATGTACTTTTTGGAGCAGAATCTTGCACCTACTGTACCTCATGGGCCGCATTTATGCACTGGAACTAAGCTATCCAAAGAAACTCAAATACAACTTAGAGGTCTTTCATAAGGGCTTCTTCAAACTTCACGACAAACAGTAACATGTTCCCCAATGTCTACGATCTCAAGGTCAGCTTTTGGCCTAAAAGCCATATAAGACATTGTTGATAGTAGCAGGATTTTGTTGCGTCACTTCACTTACATTGTAAAGTTCAGAATCTTCAGGTTTACCAAAAGTACTTTTTGAAATGGCTTTTTCACATTTGGATTATACTTGTGGGTTAGCTGAAGGATTAGTTGaccaaaacaattttattttttttttactgttttctctcccaaaagtggtttcaaacctttgtttctttcttctgttgaacactaaagaaaattatttaaagaaagcttattctgtaaccattgacttctacggtaggaaaaaacaaatttttctgttcaacagaagacaaaaaatGTTTGGGTGAGAAAACAAgtaacaagtaaaaggtgagaaaatgatgacagaatttctatttttgggtaaactatccctgtgcttgtgaagttttttttttttgtgtgtgtgtttttttttttttttttttgctcattgtGAATGTAATTTGATTTACAGCATTATCACTTAATATAGCATATGTTTAGCATATGTAGGATgcgtaaaaaaaaagtctatctAAAAAAGGTTTAGTTTTCTGTGAAGATTTTTCACTTGCTTGTTTACAATGCGTATGTTACTGTTTTGGTTGTAGCTAAGGATTAATAAACACAAGTACTATTGTGTAGAAAATAGTCTGAACCATCCATATTAAGTCCtttgtattctatcattttataTGTTTTGATGGAGTAAAAACAAATGGTATGTTGAAATgtatattgaagaaaaaaaaataaaacctgtcATTTTTCACATATCTTGTAATTTCTTTACAAAATTTGCCAGctttatgtaatattttg
>TCONS_00024741
CCAATTGAAAGAAGAACATGCGGACGAAATAAGATGATTCACTTGACAAGTGCACTGGATAACGGACAACAGCATTGACTCCAGAAGACAAACTGTTATCAGAGGCTTAATACTCttccttggtaaaaaaaaaacagagtttaTCGAAGACTAccaggTTTAAGATGACAACGATTCCATAACCATTCAAGAGCACGACTGTTCACTTGTTCCCAACATCTTTGTGGACAACAAATCCAGGGGATGAAGGTCATAAGAAAGCTGAAATAGCCATAGAGAGGGCAAATGTACTTTTTGGAGCAGAATCTTGCACCTACTGTACCTCATGGGCCGCATTTATGCACTGGAACTAAGCTATCCAAAGAAACTCAAATACAACTTAGAGGTCTTTCATAAGGGCTTCTTCAAACTTCACGACAAACAGTAACATGTTCCCCAATGTCTACGATCTCAAGGTCAGCTTTTGGCCTAAAAGCCATATAAGACATTGTTGATAGTAGCAGGATTTTGTTGCGTCACTTCACTTACATTGTAAAGTTCAGAATCTTCAGGTTTACCAAAAGTACTTTTTGAAATGGCTTTTTCACATTTGGATTATACTTGTGGGTTAGCTGAAGGATTAGTTGaccaaaacaattttattttttttttactgttttctctcccaaaagtggtttcaaacctttgtttctttcttctgttgaacactaaagaaaattatttaaagaaagcttattctgtaaccattgacttctacggtaggaaaaaacaaatttttctgttcaacagaagacaaaaaatGTTTGGGTGAGAAAACAAgtaacaagtaaaaggtgagaaaatgatgacagaatttctatttttgggtaaactatccctgtgcttgtgaagttttttttttttgtgtgtgtgtttttttttttttttttttgctcattgtGAATGTAATTTGATTTACAGCATTATCACTTAATATAGCATATGTTTAGCATATGTAGGATgcgtaaaaaaaaagtctatctAAAAAAGGTTTAGTTTTCTGTGAAGATTTTTCACTTGCTTGTTTACAATGCGTATGTTACTGTTTTGGTTGTAGCTAAGGATTAATAAACACAAGTACTATTGTGTAGAAAATAGTCTGAACCATCCATATTAAGTCCtttgtattctatcattttataTGTTTTGATGGAGTAAAAACAAATGGTATGTTGAAATgtatattgaagaaaaaaaaataaaacctgtcATTTTTCACATATCTTGTAATTTCTTTACAAAATTTGCCAGctttatgtaatattttg

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0030574 collagen catabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024740 False 1754 lncRNA 0.32 3 42282854 42286980
TCONS_00024741 True 1307 lncRNA 0.33 4 42283332 42286980

Neighbor

gene id symbol gene type direction distance location
XLOC_011648 pax1a coding upstream 4514 42274240 ~ 42278340 (+)
XLOC_011647 kiz coding upstream 237601 41992054 ~ 42045253 (+)
XLOC_011646 NA coding upstream 519490 41762185 ~ 41763364 (+)
XLOC_011645 BX511195.1 coding upstream 522929 41759808 ~ 41759925 (+)
XLOC_011644 NA coding upstream 804217 41475151 ~ 41478637 (+)
XLOC_011650 NA coding downstream 64505 42351485 ~ 42353357 (+)
XLOC_011651 NA coding downstream 174134 42461114 ~ 42461336 (+)
XLOC_011652 CR925755.1 coding downstream 182908 42469888 ~ 42502094 (+)
XLOC_011653 qpct coding downstream 555652 42842632 ~ 42872234 (+)
XLOC_011654 gskip coding downstream 726191 43013171 ~ 43019060 (+)
XLOC_011639 NA non-coding upstream 1282993 40989973 ~ 40999861 (+)
XLOC_011637 NA non-coding upstream 1788998 40486306 ~ 40493856 (+)
XLOC_011656 NA non-coding downstream 956890 43243870 ~ 43247075 (+)
XLOC_011659 NA non-coding downstream 1232624 43519604 ~ 43520300 (+)

Expression


Co-expression Network