XLOC_011650


Basic Information

Item Value
gene id XLOC_011650
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 42351485 ~ 42353357 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024495
GCCAACTCGCTTCACCAGACAACGCGGAGATGTCGTGGTCTCATCCAAACGGATTTATCGCACAGCATTGAGTTAAAGTGACCACAGAATAAAGTAAGCAAGTTAAGCACTGGCAGAggagacacatcaaccagcaagtgtaaCTGACTGAATGGATGACTGTCTAGGTTGCAAGCAGGACATACATGTTACAGTTAAGTATTTCagctacaacatactgttaaatCACAGTAACCACCATTAATTGTAACTTCACAGTAAagtatagttaattctacaagagaACACAGTGAAATCACAGAAATGGGCCTTATATCTACCTTGAAGTCACATATGGCTGTAGTTTCACTGTAAGTAAGTGTAAAACAAATCACAGTggcttactgtgaaagtaatacAATTATTAGTCAGTAATTTACTGTTAATTAAGGATCAATTATTTTACAATGTATCAATAAAACTCATATAAACATTTTGTCTGTCATTCTGTTTTTTAAGGTGAGAGTGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGAACCGACAGGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAGCAGGGGCCTTTTACAGGGGACCGCCTAAAGATActggcatcatcatcatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTTCCAGACTCAGGCAAACTCTGCTTTCACTCCGCCCAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATccgatcaggccccggaagtgactgtGGAAACTTGACTGGCCCTGTCTCGCATTGGCACGCTAACTTAAGTCGCGAGAGTGAAAACACGGCTCTTGACTACA
>TCONS_00024496
AACGCGGAGATGTCGTGGTCTCATCCAAACGGATTTATCGCACAGCATTGAGTTAAAGTGACCACAGAATAAAGTAAGCAAGTTAAGCACTGGCAGAggagacacatcaaccagcaagtgtaaCTGACTGAATGGATGACTGTCTAGGTTGCAAGCAGGACATACATGTTACAGTTAATGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGAACCGACAGGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAGCAGGGGCCTTTTACAGGGGACCGCCTAAAGATActggcatcatcatcatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTTCCAGACTCAGGCAAACTCTGCTTTCACTCCGCCCAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATccgatcaggccccggaagtgactgtGGAAACTTGACTGGCCCTGTCTCGCATTGGCACGCTAACTTAAGTCGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTTTCCACCTGGGTTTGACCTATGCATTTTAACTGTGACAAAGAATGTTGTTTTTACAAGTGACTGTCTGGTTAACACTGAAAGATATTATAGGGTAGTATTCCCAAACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGATCAGTTTGTTTATATGTAcatgttttattgtgtattttatgaTGTATTGTCTATTGTGAGATTGTTGTTACTCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTTGagctaaatttaataaaactttacTCAATCCATA
>TCONS_00024742
TTTAGCTTCTTTTGTCATGCTGTTTAGCGCGCCTATTTATGAACGAAGTTACCAAATcactttattgtcacatcatcagcagcacgtgcgCTATGTTGAGTGAAAATATTAAAACGCGTGTTTGTAGTGTTAATGCTAATTTCGTGGTATTAGAGAGtgtttgagtttttaaaaaggtaattttctGTTAACTTACTGTTAACTGTGTTCTGTTTCAGCACAGCATTGAGTTAAAGTGACCACAGAATAAAAGGCAGAggagacacatcaaccagcaagtgtaaCTGACTGAATGGATGACTGTCTAGGTTGCAAGCAGGACATACATGTTACAGTTAAGTATTTCagctacaacatactgttaaatCACAGTAACCACCATTAATTGTAACTTCACAGTAAagtatagttaattctacaagagaACACAGTGAAATCACAGAAATGGGCCTTATATCTACCTTGAAGTCACATATGGCTGTAGTTTCACTGTAAGTAAGTGTAAAACAAATCACAGTggcttactgtgaaagtaatacAATTATTAGTCAGTAATTTACTGTTAATTAAGGATCAATTATTTTACAATGTATCAATAAAACTCATATAAACATTTTGTCTGTCATTCTGTTTTTTAAGGTGAGAGTGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGTTGGACAATAAAGAACCGACAGGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAGCAGGGGCCTTTTACAGGGGACCGCCTAAAGATActggcatcatcatcatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTTCCAGACTCAGGCAAACTCTGCTTTCACTCCGCCCAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATccgatcaggccccggaagtgactgtGGAAACTTGACTGGCCCTGTCTCGCATTGGCACGCTAACTTAAGTCGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTTTCCACCTGGGTTTGACCTATGCATTTTAACTGTGACAAAGAATGTTGTTTTTACAAGTGACTGTCTGGTTAACACTGAAAGATATTATAGGGTAGTATTCCCAAACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGATCAGTTTGTTTATATGTAcatgttttattgtgtattttatgaTGTATTGTCTATTGTGAGATTGTTGTTACTCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTTGag

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014028 notochord formation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024495 False 908 lncRNA 0.42 4 42351485 42352915
TCONS_00024496 False 1023 lncRNA 0.41 5 42351505 42353357
TCONS_00024742 True 1473 lncRNA 0.38 3 42351623 42353326

Neighbor

gene id symbol gene type direction distance location
XLOC_011649 NA coding upstream 64505 42282854 ~ 42286980 (+)
XLOC_011648 pax1a coding upstream 73145 42274240 ~ 42278340 (+)
XLOC_011647 kiz coding upstream 306232 41992054 ~ 42045253 (+)
XLOC_011646 NA coding upstream 588121 41762185 ~ 41763364 (+)
XLOC_011645 BX511195.1 coding upstream 591560 41759808 ~ 41759925 (+)
XLOC_011651 NA coding downstream 107757 42461114 ~ 42461336 (+)
XLOC_011652 CR925755.1 coding downstream 116531 42469888 ~ 42502094 (+)
XLOC_011653 qpct coding downstream 489275 42842632 ~ 42872234 (+)
XLOC_011654 gskip coding downstream 659814 43013171 ~ 43019060 (+)
XLOC_011655 isca2 coding downstream 679172 43032529 ~ 43036291 (+)
XLOC_011644 NA non-coding upstream 872848 41475151 ~ 41478637 (+)
XLOC_011639 NA non-coding upstream 1351624 40989973 ~ 40999861 (+)
XLOC_011656 NA non-coding downstream 890513 43243870 ~ 43247075 (+)
XLOC_011659 NA non-coding downstream 1166247 43519604 ~ 43520300 (+)
XLOC_011660 NA non-coding downstream 1180438 43533795 ~ 43538510 (+)

Expression


Co-expression Network