XLOC_011661


Basic Information

Item Value
gene id XLOC_011661
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 43543883 ~ 43544929 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024746
tttcctcttttttttaagatcaaAGAATTCACGGCTGCTGATGTAGACTCTACCTTCATTGAAAATTTGGACAATTACACAGAACAGCTCATCCATTAATTTCACAAAAAGCGGGGAAGTGCAGGATGCAAAATCTGTGATGTGATGAAATTGCTGGAACAGGTATTGTTTACTGAAAATTCTGCTTGcctgttttagcatttaaattttAGATGTTCATTGTGTCTACCatgtaatgcattttaaaatattacaatttatttatatatttttttctatttgcacTCATAGTGTGGAAATTCTCTGGGAGGTGGTGATATGCTGTCTGACTGTGTACCTGTCTGAGAACCTCGAGAAGCTGATTACATATTACCTGGTTAGTGAATGTAGTTCATTTAGTTCACTTTCAAATGAATTTTGTAGAAAGTTTTAATTGCAAACCTGAAAATACAATTAAGCATGTAAAATGTCAATTTAGAAAGAGAAACTTTTTTATATTTGAGTGATTTTAGTCATCTTAACAAAAAATgttcaacaaaaaatgaaaagttcCTGTTTTTTAAATCACCCCAGCCAGTCGAAGATGTGGGtaactttttttcttctctaGTAGAACAGTAAAGAAAATTGGAACTGAAGCACCTGTGGTCTTTGATAAAATGCTAGTTAGCAGATGAAATTTAGTCAACAAAGACCACAGTTTAAGTTCATTTTCTTTactgttctactgaagaaaagttCTGACTTTCAGGTTCTGATTGTCTTTTTCAGTTTCTTACTTTCCCCCCTTTTTTACTTGGCtgtgcctttttatttttttttgaacagATGCatattatacattttgttttattgttttgtttcaggacATTGTGTGGAAACGGACCAGCTGGACATTGGAGAGCACATACCAAAAACTGtgaccatacacacacatacactacggacaatttagcctacccaatttacctgtaccgcatgtctttggacttgtgggggaaaccggagcacccagaggaaacccaaatcaacacgagaacatgcaaa
>TCONS_00023150
aagatcaaAGAATTCACGGCTGCTGATGTAGACTCTACCTTCATTGAAAATTTGGACAATTACACAGAACAGCTCATCCATTAATTTCACAAAAAGCGGGGAAGTGCAGGATGCAAAATCTGTGATGTGATGAAATTGCTGGAACAGTGTGGAAATTCTCTGGGAGGTGGTGATATGCTGTCTGACTGTGTACCTGTCTGAGAACCTCGAGAAGCTGATTACATATTACCTGgacATTGTGTGGAAACGGACCAGCTGGACATTGGAGAGCACATACCAAAAACTGtgaccatacacacacatacactacggacaatttagcctacccaatttacctgtaccgcatgtctttggacttgtgggggaaaccggagcacccagaggaaacccaaatcaacacgagaacatgcaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097041

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024746 False 1047 lncRNA 0.35 1 43543883 43544929
TCONS_00023150 True 413 lncRNA 0.44 3 43543898 43544929

Neighbor

gene id symbol gene type direction distance location
XLOC_011660 NA coding upstream 5373 43533795 ~ 43538510 (+)
XLOC_011659 NA coding upstream 23583 43519604 ~ 43520300 (+)
XLOC_011658 reep1 coding upstream 39780 43486436 ~ 43504103 (+)
XLOC_011657 chmp3 coding upstream 67603 43468732 ~ 43476280 (+)
XLOC_011656 NA coding upstream 296808 43243870 ~ 43247075 (+)
XLOC_011662 NA coding downstream 16475 43561404 ~ 43565736 (+)
XLOC_011663 cfap99 coding downstream 50763 43595692 ~ 43613566 (+)
XLOC_011664 znf365 coding downstream 78669 43623598 ~ 43638693 (+)
XLOC_011665 NA coding downstream 96888 43641817 ~ 43645960 (+)
XLOC_011666 adob coding downstream 115011 43659940 ~ 43661745 (+)
XLOC_011652 CR925755.1 non-coding upstream 1041789 42469888 ~ 42502094 (+)
XLOC_011651 NA non-coding upstream 1082547 42461114 ~ 42461336 (+)
XLOC_011671 BX465227.2 non-coding downstream 397008 43941937 ~ 43942051 (+)
XLOC_011672 NA non-coding downstream 459192 44004121 ~ 44007838 (+)
XLOC_011675 NA non-coding downstream 704521 44249450 ~ 44255927 (+)

Expression


Co-expression Network