XLOC_011669 (msh4)


Basic Information

Item Value
gene id XLOC_011669
gene name msh4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 43889371 ~ 43920385 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023166
GTAATAATTGCAGACTTTGTTACAGTATTTAATGTTTAACaatttgagtaaactaaattttGACAAGAAGTCCCTGGTGAATGGGTAAGTGTCCGGATTCAACATAGCCTGTAACGTAGTGGCGCGAAAAATGAACGCCATCGTCAGTGCAGGCGTGCAGCCGTTAATGTTTTGACTTTTCCTGAGCTGAGAAAGCAGCCAGATGTTTTGCAGCAGCACAGAAGAGGTGACAGCGGGTTCGAGCTCAGAGCCCGAGCGGAGCAGCAGCACTTTAACACCATATAACCTGATGAACTACAGTCAGATATTTGGCAGACAGCAGGATCCTCCATCATCTTCTGTCCTACTGACTTCACGTGAATCTGATGATGTGCGGATCAGTGTGTGTCCAGGGTCGAGCTCTGATACTCTGCCATCTGCACTCTCAGAAACCACACCGACTGCAGCCCAGGGTCACCTGAACATCAGTGAAACAGCGTACAGGACCAACTCTTCTGGAGGATCATCTGCTCACTCCTGGACCTCCAGCACTCCACAGCTGAAGACCACACCTGCACTGTCACACCACAGCCGAACCCCTCGCAGAGACCTCAACATGACAACATCTTCATCTGCATCTGCATCTCATGCGGCGCGTGCGCCTGTGATCGTGGCTGTGGTGGAGGGACGAGGTTTAGCTCGAGGGGAGATTGGGATGGCCAGTATTAACATGAAATACCCTGAGCTGGTGCTCTCACAGTTTGTAGACACTGGTACTTATACTAAGGTAATCACCAAGCTGCATAACCTGACGCCGATGGAAATTCTGATGCCAGACACGGCTAGTGTAAAAGGACAGGGAACCAAACTCTACAGTCTCATCACAGAGACCTTCCCGTCGGTCACATTTACTGCGGTCTTGAGGAGGTACTTCAATGAGAAGAAGGGCCTGGAGTTCATACAGCAGCTCTGTGTGCCTGAGTTCACCACTGTGCTGATGGAGGTGCAAACCAAATACTACTGCCTGGCATCTGCATCTGCCCTTCTGAAATACTTTGAGTTTGTCCAAAAATCAATATATGCTCCAAAGTCATTGAAAGTGACATTTAGTGGCAGTGAGCAGACCGCCATGATCGATGCAGTTTCAGCCAGCAACCTGGAGCTAGTGGTCAACCACAGAAATCACagAAGTGAACACACTCTATTTGGAGTCCTAAATCATACTAAAACTTCTGGTGGTGAGCGGCGGTTGCGCTCTAATATTCTCGAGCCCCTGCTGGAGGTGGACACTATAAAGTCACGTCAGGACACTATACAGGAGCTTTTGCAGAACGAGGAGCTCTTCTTCAGTCTGAAGAATGCCATTGCACACTTCCTGGATATAGATGAGCTGCTGTCTGCTCTTGTTCAGATCCCAAAGCAAGAGACGATTGCAGTGGCTGAAGCAAAAATAACACAAGTTATTCAGCTGAAGCACATCGTGGAACTGGTCCCATCGCTCAAGGTGATGCTGCAACATTCTACAACGCACTTGCTGACAGCGTACTGTAAATCACTTGAAGACTGCAGGTTTAACAGCATTCTGGATCATATCAAATCTCTGATTAATGATGACACCAGCTACATGAAAGGCAGTTTGACCATGCGCACGCAGAAGTGCTACGCTGTGCGACCCAACGTCAGTGAATTTCTGGACATTGCACGAAGAGCTTACACCGAGGTGGTAGATGACATTGCAGGATTAGTGGCTCAGCTTGGAGAGAAGCACAACCTTCCGCTCCGGACAAGTTTCAGCAATGCACGTGGCTTTTTTATTCAGATGAAGCTGGAGGGGGGAGCCTTGCCTGGTGGGAAATTACCAGACGAGTTCATCAAAGTTTCTAAACAAAAGAACAACTTCAGCTTCACCACTTTAGACCTCATGAAAATGAACGACCACTGTGAAGAGGCCCTAAAAGACATTTTCCACATGTCTTATGTGGTGGTTTCCAAGCTACTGAATGAAGTCCATGAACAAATCCACTGCCTGTACAAACTGTCTGATGTTGTTTCAATGCTGGACATGCTGCTCTCTTTGGCTAATGCTTGCACCATCTCAAATTACGTGCGTCCTGAATTCACAGATACTTTGGCAATACAGCAGGGTCGCCACCCCGTCCTGGAGCGCATTTCTGGGCAACAGCCCATCTCTAACAACAGCTACATCTCAGAGGGAAGCAATTTTGTGATCATAACAGGCCCAAACATGAGTGGCAAGTCCACTTTTTTGAAACAGGTGGCCCTTGTCCAGATAATGGCTCAGATAGGATGTTTTGTGCCTGCGGAGTACGCCTCTGTTCGTATTGCGGATCAGATATTCACAAGAATAGGAGTGGACGATGACTTTGAGACCAACTCCTCTACATTTATGGTTGAGATGAAAGAGGTGTCTTACATCATCCACAATGCAACCAACAGTTCTCTGATCATTATTGATGAGCTGGGTCGAGGCACCAGTCCAGAGGAGGGCATTGGCATCTGCCACAGTGTCTGTGAATTCCTCATTAATCTTAagGCCTTCACACTCTTTGCCACACACTTTCTTGAGCTGTGCCAGTTGCAAACTCTTTACCCCAACGTGGAGAACCAGCACATGCAGGTGCAGCACATCCGCACAGGAGATGGAAGAGCTGAGAGGGTCGTCTACACCTACCAGCTCAGCCGAGGACATTCAGAGGAGCGCAACTACGGCATAAGGGCAGCAGAGATGACCAATCTACCACTAGACATCATTCAGGAGGCTAAAACTGTTGCAGATAAAATCAACCAAAAGCTCTGGGCTAAGCATCATAGTGATCCTGCCACTCTTAAACAGAGAGCAGACTATCGTCTAGCCACCCGACTGGTGCAGACCGCCCGTAACTCACAGCTGGACCGTGCGAGCCTACGTCACTACTTGAAAGGACTGAAAACACAATATCTGGCTGAGATTCAGATGATAAAAGAAAATGCTACAGAGTTGGTAGAGATTGAGGAGTGAGGTCTGTGATGGTGAAACAAAAGGATAAAATACacatttggaaaaacaaaaaaagttattataaacctgtttgaatttctttcttttgatgAACAGAAAAgaggatattctgaagaatgttggacaccagtaacctttgacttccatagtattctttttttctaatatggatgccaatggctaccagttttcaaacatttttcaaaatatcttctttttagtttaacaacaacaaatttCTTAAAGGCGTAAGAATCCGATAAGTGtgaaaaaattgtcattttgggAAAATATAAGGAGATTAGTTTTAGATCAGTTTTAAACCATACCCACAGTGTacataatttgttaatttaatgaattgttgaattgtttatttaatgctgttttaGCATGAGACCAAAgttaaaagtgtatttaatgCTTTAAAAGCATTCTCTATAGAGAAACTATAGGACATCTGTGCTTAATGAGTTCAATATAAATGTTTAAGCAAACAAACATGTTCATGCACAACACCAATGCTATTAAATGCAAATGTTGACATCCTCAATATTAAGAAGTTCTGTCTATGTATTGTAGCAGTCTATTAGACTTTGTTTTATATGCAGTATGACAATTCATTTCAACGTTtgcaatgtgttgtttttttaagtcatttttaaagagcctctattacacattaaaaagggtcatattttggttttggggtct
>TCONS_00023167
CATCGTCAGTGCAGGCGTGCAGCCGTTAATGTTTTGACTTTTCCTGAGTTATCTTACAGCTGAGAAAGCAGCCAGATGTTTTGCAGCAGCACAGAAGAGGTGACAGCGGGTTCGAGCTCAGAGCCCGAGCGGAGCAGCAGCACTTTAACACCATATAACCTGATGAACTACAGTCAGATATTTGGCAGACAGCAGGATCCTCCATCATCTTCTGTCCTACTGACTTCACGTGAATCTGATGATGTGCGGATCAGTGTGTGTCCAGGGTCGAGCTCTGATACTCTGCCATCTGCACTCTCAGAAACCACACCGACTGCAGCCCAGGGTCACCTGAACATCAGTGAAACAGCGTACAGGACCAACTCTTCTGGAGGATCATCTGCTCACTCCTGGACCTCCAGCACTCCACAGCTGAAGACCACACCTGCACTGTCACACCACAGCCGAACCCCTCGCAGAGACCTCAACATGACAACATCTTCATCTGCATCTGCATCTCATGCGGCGCGTGCGCCTGTGATCGTGGCTGTGGTGGAGGGAC
>TCONS_00023168
ATGTTTTGCAGCAGCACAGAAGAGGTGACAGCGGGTTCGAGCTCAGAGCCCGAGCGGAGCAGCAGCACTTTAACACCATATAACCTGATGAACTACAGTCAGATATTTGGCAGACAGCAGGATCCTCCATCATCTTCTGTCCTACTGACTTCACGTGAATCTGATGATTCCTCATTCAGTCTTTTGTTTAGAGTGAATGTGCTCTTGAGTTCACTGTTCAATGCTTTCACTGCAGTGACAACATCTTCATCTGCATCTGCATCTCATGCGGCGCGTGCGCCTGTGATCGTGGCTGTGGTGGAGGGACGAGGTTTAGCTCGAGGGGAGATTGGGATGGCCAGTATTAACATGAAATACCCTGAGCTGGTGCTCTCACAGTTTGTAGACACTGGTACTTATACTAAGGTAATCACCAAGCTGCATAACCTGACGCCGATGGAAATTCTGATGCCAGACACGGCTAGTGTAAAAGGACAGGGAACCAAACTCTACAGTCTCATCACAGAGACCTTCCCGTCGGTCACATTTACTGCGGTCTTGAGGAGGTACTTCAATGAGAAGAAGGGCCTGGAGTTCATACAGCAGCTCTGTGTGCCTGAGTTCACCACTGTGCTGATGGAGGTGCAAACCAAATACTACTGCCTGGCATCTGCATCTGCCCTTCTGAAATACTTTGAGTTTGTCCAAAAATCAATATATGCTCCAAAGTCATTGAAAGTGACATTTAGTGGCAGTGAGCAGACCGCCATGATCGATGCAGTTTCAGCCAGCAACCTGGAGCTAGTGGTCAACCACAGAAATCACagTGAACACACTCTATTTGGAGTCCTAAATCATACTAAAACTTCTGGTGGTGAGCGGCGGTTGCGCTCTAATATTCTCGAGCCCCTGCTGGAGGTGGACACTATAAAGTCACGTCAGGACACTATACAGgtgatcttttttttcagtctaaAATTTTCACACACTTCCATTGCACACTTCCTGGATATAGATGAGCTGCTGTCTGCTCTTGTTCAGATCCCAAAGTTTAACAGCATTCTGGATCATATCAAATCTCTGATTAATGATGACACCAGCTACATGAAAGGCAGTTTGACCATGCGCACGCAGAAGTGCTACGCTGTGCGACCCAACGTCAGTGAATTTCTGGACATTGCACGAAGAGCTTACACCGAGGTGGTAGATGACATTGCAGGATTAGTGGCTCAGCTTGGAGAGAAGCACAACCTTCCGCTCCGGACAAGTTTCAGCAATGCACGTGGCTTTTTTATTCAGATGAAGCTGGAGGGGGGAGCCTTGCCTGGTGGGAAATTACCAGACGAGTTCATCAAAGTTTCTAAACAAAAGAACAACTTCAGCTTCACCACTTTAGACCTCATGAAAATGAACGACCACTGTGAAGAGGCCCTAAAAGACATTTTCCACATGTCTTATGTGGTGGTTTCCAAGCTACTGAATGAAGTCCATGAACAAATCCACTGCCTGTACAAACTGTCTGATGTTGTTTCAATGCTGGACATGCTGCTCTCTTTGGCTAATGCTTGCACCATCTCAAATTACGTGCGTCCTGAATTCACAGATACTTTGGCAATACAGCAGGGTCGCCACCCCGTCCTGGAGCGCATTTCTGGGCAACAGCCCATCTCTAACAACAGCTACATCTCAGAGGGAAGCAATTTTGTGATCATAACAGGCCCAAACATGAGTGGCAAGTCCACTTTTTTGAAACAGGTGGCCCTTGTCCAGATAATGGCTCAGATAGGATGTTTTGTGCCTGCGGAGTACGCCTCTGTTCGTATTGCGGATCAGATATTCACAAGAATAGGAGTGGACGATGACTTTGAGACCAACTCCTCTACATTTATGGTTGAGATGAAAGAGGTGTCTTACATCATCCACAATGCAACCAACAGTTCTCTGATCATTATTGATGAGCTGGGTCGAGGCACCAGTCCAGAGGAGGGCATTGGCATCTGCCACAGTGTCTGTGAATTCCTCATTAATCTTAagGCCTTCACACTCTTTGCCACACACTTTCTTGAGCTGTGCCAGTTGCAAACTCTTTACCCCAACGTGGAGAACCAGCACATGCAGGTGCAGCACATCCGCACAGGAGATGGAAGAGCTGAGAGGGTCGTCTACACCTACCAGCTCAGCCGAGGACATTCAGAGGAGCGCAACTACGGCATAAGGGCAGCAGAGATGACCAATCTACCACTAGACATCATTCAGGAGGCTAAAACTGTTGCAGATAAAATCAACCAAAAGCTCTGGCATCATAGTGATCCTGCCACTCTTAAACAGAGAGCAGACTATCGTCTAGCCACCCGACTGGTGCAGACCGCCCGTAACTCACAGCTGGACCGTGCGAGCCTACGTCACTACTTGAAAGGACTGAAAACACAATATCTGGCTGAGATTCAGATGATAAAAGAAAATGCTACAGAGTTGGTAGAGATTGAGGAGTGA
>TCONS_00023169
ATGCATGCAAAACTTGTATGGATTGACTCCTCTTGTGGTTTGTCCTCAGCCCAGGGTCACCTGAACATCAGTGAAACAGCGTACAGGACCAACTCTTCTGGAGGATCATCTGCTCACTCCTGGACCTCCATGACAACATCTTCATCTGCATCTGCATCTCATGCGGCGCGTGCGCCTGTGATCGTGGCTGTGGTGGAGGGACGAGGTTTAGCTCGAGGGGAGATTGGGATGGCCAGTATTAACATGAAATACCCTGAGCTGGTGCTCTCACAGTTTGTAGACACTGGTACTTATACTAAGGTAATCACCAAGCTGCATAACCTGACGCCGATGGAAATTCTGATGCCAGACACGGCTAGTGTAAAAGGACAGGGAACCAAACTCTACAGTCTCATCACAGAGACCTTCCCGTCGGTCACATTTACTGCGGTCTTGAGGAGGTACTTCAATGAGAAGAAGGGCCTGGAGTTCATACAGCAGCTCTGTGTGCCTGAGTTCACCACTGTGCTGATGGAGGTGCAAACCAAATACTACTGCCTGGCATCTGCATCTGCCCTTCTGAAATACTTTGAGTTTGTCCAAAAATCAATATATGCTCCAAAGTCATTGAAAGTGACATTTAGTGGCAGTGAGCAGACCGCCATGATCGATGCAGTTTCAGCCAGCAACCTGGAGCTAGTGGTCAACCACAGAAATCACagAAGTGAACACACTCTATTTGGAGTCCTAAATCATACTAAAACTTCTGGTGGTGAGCGGCGGTTGCGCTCTAATATTCTCGAGCCCCTGCTGGAGGTGGACACTATAAAGTCACGTCAGGACACTATACAGgtgatcttttttttcagtctaaAATTTTCACACACTTCCATTGCACACTTCCTGGATATAGATGAGCTGCTGTCTGCTCTTGTTCAGATCCCAAAGTTTAACAGCATTCTGGATCATATCAAATCTCTGATTAATGATGACACCAGCTACATGAAAGGCAGTTTGACCATGCGCACGCAGAAGTGCTACGCTGTGCGACCCAACGTCAGTGAATTTCTGGACATTGCACGAAGAGCTTACACCGAGGTGGTAGATGACATTGCAGGATTAGTGGCTCAGCTTGGAGAGAAGCACAACCTTCCGCTCCGGACAAGTTTCAGCAATGCACGTGGCTTTTTTATTCAGATGAAGCTGGAGGGGGGAGCCTTGCCTGGTGGGAAATTACCAGACGAGTTCATCAAAGTTTCTAAACAAAAGAACAACTTCAGCTTCACCACTTTAGACCTCATGAAAATGAACGACCACTGTGAAGAGGCCCTAAAAGACATTTTCCACATGTCTTATGTGGTGGTTTCCAAGCTACTGAATGAAGTCCATGAACAAATCCACTGCCTGTACAAACTGTCTGATGTTGTTTCAATGCTGGACATGCTGCTCTCTTTGGCTAATGCTTGCACCATCTCAAATTACGTGCGTCCTGAATTCACAGATACTTTGGCAATACAGCAGGGTCGCCACCCCGTCCTGGAGCGCATTTCTGGGCAACAGCCCATCTCTAACAACAGCTACATCTCAGAGGGAAGCAATTTTGTGATCATAACAGGCCCAAACATGAGTGGCAAGTCCACTTTTTTGAAACAGGTGGCCCTTGTCCAGATAATGGCTCAGATAGGATGTTTTGTGCCTGCGGAGTACGCCTCTGTTCGTATTGCGGATCAGATATTCACAAGAATAGGAGTGGACGATGACTTTGAGACCAACTCCTCTACATTTATGGTTGAGATGAAAGAGGTGTCTTACATCATCCACAATGCAACCAACAGTTCTCTGATCATTATTGATGAGCTGGGTCGAGGCACCAGTCCAGAGGAGGGCATTGGCATCTGCCACAGTGTCTGTGAATTCCTCATTAATCTTAagGCCTTCACACTCTTTGCCACACACTTTCTTGAGCTGTGCCAGTTGCAAACTCTTTACCCCAACGTGGAGAACCAGCACATGCAGGTGCAGCACATCCGCACAGGAGATGGAAGAGCTGAGAGGGTCGTCTACACCTACCAGCTCAGCCGAGGACATTCAGAGGAGCGCAACTACGGCATAAGGGCAGCAGAGATGACCAATCTACCACTAGACATCATTCAGGAGGCTAAAACTGTTGCAGATAAAATCAACCAAAAGCTCTGGCATCATAGTGATCCTGCCACTCTTAAACAGAGAGCAGACTATCGTCTAGCCACCCGACTGGTGCAGACCGCCCGTAACTCACAGCTGGACCGTGCGAGCCTACGTCACTACTTGAAAGGACTGAAAACACAATATCTGGCTGAGATTCAGATGATAAAAGAAAATGCTACAGAGTTGGTAGAGATTGAGGAGTGA
>TCONS_00023170
ATGAAAGGCAGTTTGACCATGCGCACGCAGAAGTGCTACGCTGTGCGACCCAACGTCAGTGAATTTCTGGACATTGCACGAAGAGCTTACACCGAGGTGGTAGATGACATTGCAGGATTAGTGGCTCAGCTTGGAGAGAAGCACAACCTTCCGCTCCGGACAAGTTTCAGCAATGCACGTGGCTTTTTTATTCAGATGAAGCTGGAGGGGGGAGCCTTGCCTGGTGGGAAATTACCAGACGAGTTCATCAAAGTTTCTAAACAAAAGAACAACTTCAGCTTCACCACTTTAGACCTCATGAAAATGAACGACCACTGTGAAGAGGCCCTAAAAGACATTTTCCACATGTCTTATGTGGTGGTTTCCAAGCTACTGAATGAAGTCCATGAACAAATCCACTGCCTGTACAAACTGTCTGATGTTGTTTCAATGCTGGACATGCTGCTCTCTTTGGCTAATGCTTGCACCATCTCAAATTACGGTAATaaatatataaatactgtatatatttggcgcagtaggtag

Function

symbol description
msh4 Predicted to enable ATPase, acting on DNA. Predicted to be involved in meiotic mismatch repair and resolution of meiotic recombination intermediates. Predicted to act upstream of or within mismatch repair. Predicted to be active in synaptonemal complex. Orthologous to human MSH4 (mutS homolog 4).

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0000710 meiotic mismatch repair biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0000795 synaptonemal complex cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-131121-643 Predicted to enable ATPase, acting on DNA. Predicted to be involved in meiotic mismatch repair and resolution of meiotic recombination intermediates. Predicted to act upstream of or within mismatch repair. Predicted to be active in synaptonemal complex. Orthologous to human MSH4 (mutS homolog 4).

Ensembl:

ensembl_id ENSDARG00000075826

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023166 False 3712 mRNA 0.44 22 43889371 43920385
TCONS_00023167 False 541 mRNA 0.53 4 43889509 43895523
TCONS_00023168 False 2472 mRNA 0.47 17 43890736 43919671
TCONS_00023169 False 2370 mRNA 0.47 17 43895158 43919671
TCONS_00023170 True 525 mRNA 0.45 5 43908428 43915695

Neighbor

gene id symbol gene type direction distance location
XLOC_011668 zgc:66313 coding upstream 802 43863708 ~ 43888569 (+)
XLOC_011667 FO704777.1 coding upstream 39271 43843536 ~ 43850100 (+)
XLOC_011666 adob coding upstream 227626 43659940 ~ 43661745 (+)
XLOC_011665 NA coding upstream 243411 43641817 ~ 43645960 (+)
XLOC_011664 znf365 coding upstream 250678 43623598 ~ 43638693 (+)
XLOC_011670 ktn1 coding downstream 6138 43926523 ~ 44002032 (+)
XLOC_011671 BX465227.2 coding downstream 21552 43941937 ~ 43942051 (+)
XLOC_011672 NA coding downstream 83736 44004121 ~ 44007838 (+)
XLOC_011673 peli2 coding downstream 110307 44030692 ~ 44080733 (+)
XLOC_011674 tmem260 coding downstream 195056 44115441 ~ 44194885 (+)
XLOC_011662 NA non-coding upstream 323635 43561404 ~ 43565736 (+)
XLOC_011661 NA non-coding upstream 344442 43543883 ~ 43544929 (+)
XLOC_011660 NA non-coding upstream 350861 43533795 ~ 43538510 (+)
XLOC_011659 NA non-coding upstream 369071 43519604 ~ 43520300 (+)
XLOC_011675 NA non-coding downstream 329065 44249450 ~ 44255927 (+)
XLOC_011676 NA non-coding downstream 337666 44258051 ~ 44262819 (+)
XLOC_011677 BX548045.2 non-coding downstream 371020 44291405 ~ 44291520 (+)

Expression


Co-expression Network