CI01000152_01000620_01011373


Basic Information

Item Value
gene id CI01000152_01000620_01011373
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1000399 ~ 1011373 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000152_01000620_01011373.mRNA
TGAGGAGTTTTAGCAGTGTGCCGGAGGCGACCTCAGATTCAGATGATGAAGACAAACTGCACATTGTAGAGGAGGACAGTATTGCTGACGATCCTGACCAAAAGTCCTCAGTATTCCAGCTCAAAGCAGCACGGCAGCTCTCTGACACATGCATACAGGACGATGGCAGCCTGGGGCCAGATGCTTTAGTACAAGAAATAAGGGTCAAAGAGGAGTGTGTCACTGATGAGGAAGACGGTCCTGATAATGATGTGGCCGGTGAGGAAAAGCAGACGGAAACGGAGCGTAATTACTCAGATGCCCAGGAGGAGCATCAGAGAACGCCAGAGCGAGGGGTCCACGATGAGAACGGTACTCCTGATGCATTCTCCCAACTGCACACCTGTCCTCACTGTTCCCGTGGTTACAAGCGTCACACGTCACTGAAGGAGCACATTAAACTACGGCATGAAAAGAGCGAGGACAACTACTGCTGCTCCCTCTGTAGCTACACCTTCACCTACCGCACGCAGCTCGTCCGTCACATGACCGCACACAGACACGTTCGAGAGCAGCGGACTATTTCTCAGTCAGGCGGAAACAGAAAGTTTAAGTGTACAGAATGCTCCAAGGCCTTCAAATACAAACATCACCTGAAGGAGCACCTGCGCATCCACAGCGGTCAGTTGTCAGCCATGGCACAACTTTACAGAAATGATTCTGTTATAACCCTAGTTAATGTTTTTGTAAATCCAGGTGAGAAGCCGTATGAATGCTCTAATTGTCGGAAGCGTTTCTCTCACTCGGGGTCCTACAGCTCTCACATCAGCAGTAAGAAGTGTGCGAGCGTGAACAAAGCGGTCAACGGCCTGCCTCGCACACCTGGAGTGACAACGACTCTAACCATTTCTCGCCCAACACGCATCCTTCTGAGGGAGAAGGTGGAAATTACTAACAAGCCTCTGCAAGAGCAGCTCCCCCTGAAACAGATCAAACAGGAGCCTGTTGAACACCAACCCAAATCTGCACCAGCCACACCTACAATAGCCGCCGCAAATACCAACGGAGTCGTGGCTCCGCAAGGTGTCGTCCAAACCTTGGTCCTGCCCACAGTTGGGCTGGTCCAGCCAATCAGCATCAACCTTAGTGACTTACAGAATGCGTTGAACGCTGCGATGGATGGCAGGCAGCTGTTGACTAGTGGTAATGCAAACGGAACCAATGCTAAAATCGTAGGCCAAGTGCCGGCGCAGACGCAGGCACAAGCTGTCGTGTTGCAGCCACAGCAGGCACAGCCCCAAGTGATCTCCGCCATCTCTCTACCAGTTGTGGGACAAGACGGAAATACCAAAATTATCATCAACTACAACCCCCAGCTAGACTCACAACTCAAGGGGGTAAAAGTGAACACAGTGCAGCCCACCGTGACGCAAACCGGTACGGCGCAAGCAAAATCTACAGCTTCTAACATTACACAGCCAAACGTGGTCCAGGTTAATTCGGTACAGTCCAACTCGACTGAAACCCAAACATTAGGTACACCTAAACCTACACAGGTAAATATCATTAAACCAGTCCAAAGCAAACCGCCGTCTATCATCAAGATAACCCCTGCACAGGCCGCCAGGTTGGTCCAAGCTCGGGCGGCACAACCTAAGCTCACCCAGCAAACTTTACTACTAGTAAGAAGGGCAGATGGGTCGCAGAGCCTCGTGGTTCGACAAATACCTGTCACCAATCCCAACACGCAGGGCACCGAGATGAAATCAACCCCAGACAAGACTACAAACATACCACCAGCAGACAGAAAAGGGACAACTGAAAATACCAGTTCGCTGGAGGATAATTGTGAACAACAAAAACTGACTGCACCACCAGAAATCAAAATCAAAACCGAACCAGACTCTCCATCCAAGGTCGAGACCGACATGCAGAATGAAGGAGAGAAAGAAGAGATGAAGACAGATGGAAATAAAGAGGAAGGGAAACAAACAACAGCAACAACTGATGCAGTCTCTCACTCTGGAACAGTTCACAGTGGCGTCGCCTGTGGAGATAACTTCCATAACTATGTGTCATGTCTGCTTTGTGATAACTCCCCGAATAAACGGAAGCTCGCAGACTCTCAAGACAGTGACGCCAAAGCGTCTCCTACAACTATCTCTCTCACCTCTCTACTAGATAAGGATAAGAGTGGAGCAGCAGAACGCCTCCTTCCTCTTTTGAAGGCCTACAGTCAGAACCCAGAGCCTACTGACGAGCAGCTGTCACAGGTTGCCAAGACAGTCAAGCTTCCTCTAGAGGCGGTCAGCAAGTGGTACCAGAAGATGCGCTCTAAAAGGATATTGCTACAGGCTGCAAGCAACCCGAAAAACAACCAAGAGAAAAATACATCTGCTGTGTCTCAAGAAACGAACTCAACTCAAGCCACCTGCACTCCCAACCAACCCCTTGATGACACCTCAGCGGACACCCAAACTGAAAGTGCGGCTTCACCCGCCTCTCCTCCAGCCAGTCTCTCCACCGATGATCTCGTCATTGTAAAGACAGAAGACGTAGAGGAGGAGTTGCAGTCTGAACCGCTGGACCTCTCACTCCCTAAGTCCAGTCCCACTCAACCCAGCACCACCACTAAGCTGTCGGTCTCCACCCAAAAGGAACCGCTCAACCTCACCTGCCTCAAGAAGCAACCGTTGCCAGGAAACACCATCTATGTGACGCAGGGCGGCACGGGTCCATTAAACATCGTGTCAGCGTCATTGCCAACGCTGGTTGCCATAGCAGAGCCAGGTGGTGTTCCGTGCATCGGCACTGCAATAACCGGTAACAAACGAACCATCCTTATTCCTCAGCTCACCTACACCTACACCACTAGCTCCAGCATCAAGACGCCTGACAGTGTCTCGACAGACACAAAGGGGACGGTGATACTCAACAAATGTCCGAAGGTACCGGACATCACTTCTGACTCCGTGTCAGGGGTAGAGGACCAGAACGATGAAGATTCACCTCTCATGAAGAAAAGGAGAAAGACTGTTGGTGGCCTGTATGCTTGTGATCTGTGTGACAAAATCTTTCAGAAGAGCAGCTCACTGCTGCGACACAAGTATGAACACACAGGTACGTAAAACCACATGATTTACAGCATTTGGACAGTTTACAGTGTAGTATTAGAAAACAAAATATACCTGTAGCTCAACTGGTGGCGCTAGCAACTCCAAAGTCTTAGGGTTTGATTTACAGGGAAAACAATGCTGACATTAAAAAATACTAATAATAATAAATGTAAAGCTTTATTGGTCTGTAAGTCGCTTTGGATGCAATTGTTTGCAAAACGCATAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000152_01000620_01011373.mRNA True 3328 mRNA 0.49 8 1000399 1011373

Neighbor

gene id symbol gene type direction distance location
CI01000152_00998440_00998727 NA coding downstream 1552 998269 ~ 998847 (-)
CI01000152_00931110_00939265 KIF5BB, KIF5B, KIF5BA coding downstream 61134 931110 ~ 939265 (-)
CI01000152_00920046_00920561 NA coding downstream 79838 919226 ~ 920561 (-)
CI01000152_00906847_00916847 NA coding downstream 83552 906268 ~ 916847 (-)
CI01000152_00888465_00904680 NA coding downstream 95584 888465 ~ 904815 (-)
CI01000152_01140574_01151786 NA coding upstream 128840 1140213 ~ 1152870 (-)
CI01000152_01241584_01266061 KIRRELB coding upstream 229777 1241150 ~ 1266061 (-)
CI01000152_01296980_01330911 CADM3 coding upstream 285317 1296690 ~ 1330911 (-)
CI01000152_01375796_01378931 SDHC coding upstream 364070 1375443 ~ 1380019 (-)
CI01000152_01380778_01397434 ATP1A2A coding upstream 368767 1380140 ~ 1397434 (-)
G358803 NA non-coding downstream 378432 609912 ~ 621967 (-)
G358794 NA non-coding downstream 461651 530590 ~ 538748 (-)
G358955 NA non-coding downstream 491098 509064 ~ 509301 (-)
G358938 NA non-coding downstream 580578 419454 ~ 419821 (-)
G358820 NA non-coding downstream 599487 397020 ~ 400912 (-)
G359079 NA non-coding upstream 12677 1024050 ~ 1024250 (-)
G359080 NA non-coding upstream 13061 1024434 ~ 1118506 (-)
G359092 NA non-coding upstream 42152 1053525 ~ 1107612 (-)
G359139 NA non-coding upstream 96786 1108159 ~ 1108712 (-)
CI01000152_00562189_00571618 CREMA other downstream 435115 560484 ~ 572648 (-)
G359178 NA other upstream 326287 1337660 ~ 1344005 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other upstream 879485 1890149 ~ 1893866 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 1010166 2015257 ~ 2024292 (-)
G359788 NA other upstream 1306895 2318268 ~ 2318734 (-)
G359800 NA other upstream 1357619 2368992 ~ 2459836 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location