CI01000152_01296980_01330911 (CADM3)


Basic Information

Item Value
gene id CI01000152_01296980_01330911
gene name CADM3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1296690 ~ 1330911 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000152_01296980_01330911.mRNA
CTCTATTTTTAAAAGCAGTGTCTCGTTAAAGCCTTTTAGGCTAATCAGGCAGAGTTCGGCCCAGCTTCACACTCGCCTAGCGCACCTGCGTTTGTCCCACATATTTGCCCGTGGAAAACCGGCATTTGGCCTGCGACTGAGTAGGTTAATCCCAGCTCTAGCAAAACATCAGGCTAGAATTAAGCCAGCGTTTACCCTGAATCAATCCAAGATTGAGATCAACAAAAGCAGTATCACATGGCCAAGCTTGGCCAGCGTCAAGCCAGCATTTGCCCAGCATTCACTAAACATTAATGCTCCATTCAAGCTGCCATTAGCTGAACATTCAGACAGCGCTTCGCCCAGAGTTGATCCAGCAGCGGTCAGCATTAAAAAGGTCATCGATTATAACCTAAGTGATGAAGACCCCTTCCAGCCAGTGACCCAAGATGAGACGGTGGCAGTGGGCGGGGTGGTGACCCTGACCTGCAGCGTAAAGGAAAATGATAACTCCTCCCTCCAGTGGTCCAACACGGCCCAGCAGACCTTGTACTTCGGAGAGAAGAGAGCACTGAGAGATAACCGTATCCAGTTGGTAAAGTCCACGGCTACAGAGCTGATAATCACCATTGCGGACGTTCAGCTGTCAGATGATGGAGAGTACACCTGTTCCATTTTCACCATGCCTGTACGGACCGCACGAGCCACAGTTACCGTACTTGGTGTTCCAGGTAAGCCGGTGATAACAGGTTTTGAAGATGCTGTTCAGGAGGGTGGCAAGGTTACTCTCACCTGCACGAGTTCAGGCAGCAAACCTCCTGCTAAACTACACTGGTACCGTGATCAAGAGGAACTACCGGGGCGTCCTGATGTTGTGGAGTCCAACCCTGATGAACCAACCTACACAGTAACCAGCGAGCTCACCCTCACTGTCACAAGAAATGATAACAACGCTCTGATCGCCTGTGCGGTGGATCACCCCTCCATCGCCAATGGAGACAAGAAGACAGAACAGCCACTCAGCGTCTTGTGGCACCGACTGAATTACGCTGGTACTACCGAGTATCGATTCACATTAAATCAATCGGTGCCAAATTTGGTACCTGAGAAAGCATCTGTGCGCGAGAGGTACATTAGAGAAAGAGTCCATGCGACGTCACCCCTGCAACTTGTTCAAACACAACACACAGGGCAATGGCTAAACGTTCTGAGTGTGTCAATTCATCCTGAGAGTGACCTGCCCAGAGAAGGAGAGAAGTTTTACCTTCAGTGTGTGGGGAACGGAAATCCAGACTCGTTTGATAGTGCGCCAAATTGCAAAACCCTTCAATCTGCTCAATTAAACGACTCTTTCTGCTTTTCTTTTGATGTGAAATTTCAAAAAGCTGTATATGTGAGGAAAGACGGAGGGCTCCCCCCGCTGGCGAAGGAGGATGGTGCGTTCCTGCGCTTCGAATCACTCAACAAGTCGGATAATGGCGTTTATGAGTGCCAGGCTGATAACGGGATCGGTGTCGGGGATGTATCGCACACTCTCCTGGTTCAAGGCAAAATCACTGAAGCTTATGATAGACTCTTTGCTGAAATCTTGCTTTTGATTATTCATGTGTTTCCTTTCAAACAGAGAGACCCCACAGCGATGTCCACCTCTTCAGGAGTAGACCATGCTGTGATTGGTGGAGTGGTTGCTGTCATTGTCTTCATCATGCTTTGTCTCCTCATCGTCCTCGGCAGATACCTCATCAGACACAAAGGTACGTACCTGACTCATGAGGCGAAAGGTTCTGACGACGCTCCTGATGCAGACACGGCCATCATTAACGCTGAGGGGGGCCACTCTGGGGTGGATGACAAGAAAGAGTACTTCATCTAGAGATCCATCCCTCCGTACCCTCTTCCTTCACACGCTTCAGTTCACTCAGCCTGATGTGGAAAACGGTGATGGCAGAAGAGAGAGGAAATATGTGAGGAAAAAAACAAAACAAAACAAAAAGTGTTGACCTGTTGGAACTGAAGGACCTCAAATAAGCTTCGACACACAGGACAGGGAAGTGAGAGTTATGCACTGGCGCGTGGGCTCATTTTTACACACACGCACACTCTTTCTTCATTATCACAATATGACACATGAGCAAACACAAATAACGAGACATAAACAATAAA

Function

symbol description
cadm3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in alar plate midbrain region; immature eye; nervous system; radial glial cell; and trigeminal placode. Orthologous to human CADM3 (cell adhesion molecule 3).

GO:

id name namespace
GO:0008037 cell recognition biological_process

KEGG:

id description
K06780 CADM3, IGSF4B, NECL1, TSLL1; cell adhesion molecule 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000152_01296980_01330911.mRNA True 2142 mRNA 0.49 13 1296690 1330911

Neighbor

gene id symbol gene type direction distance location
CI01000152_01241584_01266061 KIRRELB coding downstream 30629 1241150 ~ 1266061 (-)
CI01000152_01140574_01151786 NA coding downstream 143933 1140213 ~ 1152870 (-)
CI01000152_01000620_01011373 NA coding downstream 285317 1000399 ~ 1011373 (-)
CI01000152_00998440_00998727 NA coding downstream 297843 998269 ~ 998847 (-)
CI01000152_00931110_00939265 KIF5BB, KIF5B, KIF5BA coding downstream 357425 931110 ~ 939265 (-)
CI01000152_01375796_01378931 SDHC coding upstream 44532 1375443 ~ 1380019 (-)
CI01000152_01380778_01397434 ATP1A2A coding upstream 49229 1380140 ~ 1397434 (-)
CI01000152_01415414_01419131 MYP0, MPZ coding upstream 84399 1415310 ~ 1420063 (-)
CI01000152_01429044_01451054 LIG1 coding upstream 97954 1428865 ~ 1451054 (-)
CI01000152_01545763_01547190 NA coding upstream 214423 1545334 ~ 1547190 (-)
G359124 NA non-coding downstream 6617 1287518 ~ 1290073 (-)
G359126 NA non-coding downstream 111357 1184246 ~ 1185333 (-)
G359080 NA non-coding downstream 178184 1024434 ~ 1118506 (-)
G359194 NA non-coding upstream 133167 1464078 ~ 1464328 (-)
G359198 NA non-coding upstream 135795 1466706 ~ 1467174 (-)
G359199 NA non-coding upstream 138334 1469245 ~ 1471571 (-)
G359200 NA non-coding upstream 140850 1471761 ~ 1471961 (-)
G359202 NA non-coding upstream 141388 1472299 ~ 1535242 (-)
CI01000152_00562189_00571618 CREMA other downstream 731406 560484 ~ 572648 (-)
G359178 NA other upstream 6749 1337660 ~ 1344005 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other upstream 559947 1890149 ~ 1893866 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 690628 2015257 ~ 2024292 (-)
G359788 NA other upstream 987357 2318268 ~ 2318734 (-)
G359800 NA other upstream 1038081 2368992 ~ 2459836 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016778 cadm3 coding NC_007113.7 CM002886.2 44049081 ~ 44183613 (-)