CI01000152_01375796_01378931 (SDHC)


Basic Information

Item Value
gene id CI01000152_01375796_01378931
gene name SDHC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1375443 ~ 1380019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000152_01375796_01378931.mRNA
AATGTTATCACAATGACCTTGCATACACTGTAAAAAATAATTGTTGGTTTAACTTAGAAAAGTAAGTTAGTTGCCTGGTTGCCTTAAAATTTTAAGTTCATTGAAATTATCTGAACCACATTAAAGGGTTAGTTCACCCCAAAATGAAAATAATGTCATTTATTACTCACCCTCATGTCATTCTACACCCGTAAGGACTTCATTCATCTTCGGAACACAAATTAAGATATTTTGATTAAATCCGGTGGCTCCGTGAGGCCTCCATTCACAGCAATGACATTTCCTCTCTCATAAAGGTACTAAAAACATATTTAAAACAGTTCATGTGAGTTCAGTAGTTCTACTTTAATATTATAAAGCGACGAGAATTTGTGTTCCGAAGATGAATGAAGGCCTTACAGGTGTGGAACGGCATGAGGGTGAGTAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAATTATTGAAGTTGATTTGACAAAAGGAAAAATGTGATAACTGAAAATTATTTTTACAGTGTAATAGATAATGTTTTTAAGGCTTTTTTGTTCTCAGAGAATTTAATTGAAAAGAGATATTTTTCAAATTCTTTCACAAATATAAGAAAGAGAGGTTTAGCATTTAGATATTTAGATTTATGAATGTGGAATTTAGCGAGTAACAAGATCAGATTCATAACATAAAATTGACCTTTTTTTGACTGAGCATAATCAACAAAGCCTAGTACCACATACTTCCAAAACAACACATATTCATTATAAATTTCATTCCTTATAAAACCTAAAAAATCTTGCTAAAACATTTTAGTATGGAACAATACCGAAAAATATGAACTAGGCTACAGTTCCAGGCAACATCAGAGTTGTCACAGAAGGAGCAACTGGAGGAAATATCCTTTTTGAACTTTTTTAGGTAAGTTAGTAATTTGCACGGTAGCACTTGTGAATTATTTTAAAATAAATCTCTTTTACTTGAGAGATGTGAAAGTTGTATAATTGACCTTACCAAAATGGCGGTTGGCTTGTGATTTCGTTTGCAACATCCGGCTGCGTCACGTCCGAACACTCAAGATCAAAAACATGGCGTTGCTTCTAAGGACGGTGGCCCGACAGGGTCTGTGTTCGTCACGGTCACAGTTTGGCGTACTCTACAGACATGCTGTCCCTATGGGAACCACAGCGAAAGAGGAAATGAACAAGTATTGGACAAAAAACACACGACTCAACAGACCTGTCTCACCACATTTAAGCATCTACCAGTGGTCTGTCCCCATGATGCTGTCAATCTCACACAGAGGAACAGGCGTAGCACTAAGTTCAGGAATCTCTGCGTTTGCACTTGCTGCGTTGGTTTTACCGGAGAGTTACCCATATTACCTTGATCTCATTCACTCCATGTCCTTTGGGCCCCAGTTCCTTGCTTTCAGCAAATTTGCTCTAGCTTTCCCAGTGGCTTTTCACACCTTCAACGGCATCCGTCATCTGATGTGGGATGTTGGGAAGGGTTTTAAGATTCCTGACGTCTATCGTTCTGGCTACATTGTCATTGCTCTGACTATTCTCACATCAATTGGTCTTGCTGCCATGTAAATCCATGAGACACAAATGAAGAAAACGTGGAAGTAGAGAAGGTGGTGTTATTTTGTTTATCTGTCCCAGAAGTGGTCTGTAAGCACCAAATTCATTAATATAAAAAATAAAAATATCTATGTCTACACAAAAAGTATCCTCAGTGTTTTTTTGTTTTTTTGTTTTTCATGTTAAATGCCTTGCAACTGAAGGCATGGCACATGGAACTTGGCATTTGCAATTAACTTTACAGCAATATTCAGGAATGGTCTTAGCATTTCCTAAACCATTTGCCTTGTTTTACTGTATCATTGCAGTATTTCCAAAAATGTTGACATGTGCTTGATTTCACTTCCTGTTTTGGGATAAATAAA

Function

symbol description
sdhc Predicted to enable electron transfer activity; metal ion binding activity; and succinate dehydrogenase activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; and paraganglioma. Orthologous to human SDHC (succinate dehydrogenase complex subunit C).

GO:

id name namespace
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) cellular_component

KEGG:

id description
K00236 SDHC, SDH3; succinate dehydrogenase (ubiquinone) cytochrome b560 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000152_01375796_01378931.mRNA True 1951 mRNA 0.37 6 1375443 1380019

Neighbor

gene id symbol gene type direction distance location
CI01000152_01296980_01330911 CADM3 coding downstream 44532 1296690 ~ 1330911 (-)
CI01000152_01241584_01266061 KIRRELB coding downstream 109382 1241150 ~ 1266061 (-)
CI01000152_01140574_01151786 NA coding downstream 222686 1140213 ~ 1152870 (-)
CI01000152_01000620_01011373 NA coding downstream 364070 1000399 ~ 1011373 (-)
CI01000152_00998440_00998727 NA coding downstream 376596 998269 ~ 998847 (-)
CI01000152_01380778_01397434 ATP1A2A coding upstream 121 1380140 ~ 1397434 (-)
CI01000152_01415414_01419131 MYP0, MPZ coding upstream 35291 1415310 ~ 1420063 (-)
CI01000152_01429044_01451054 LIG1 coding upstream 48846 1428865 ~ 1451054 (-)
CI01000152_01545763_01547190 NA coding upstream 165315 1545334 ~ 1547190 (-)
CI01000152_01557532_01565618 NA coding upstream 177206 1557225 ~ 1565618 (-)
G359124 NA non-coding downstream 85370 1287518 ~ 1290073 (-)
G359126 NA non-coding downstream 190110 1184246 ~ 1185333 (-)
G359139 NA non-coding downstream 266731 1108159 ~ 1108712 (-)
G359092 NA non-coding downstream 267831 1053525 ~ 1107612 (-)
G359194 NA non-coding upstream 84059 1464078 ~ 1464328 (-)
G359198 NA non-coding upstream 86687 1466706 ~ 1467174 (-)
G359199 NA non-coding upstream 89226 1469245 ~ 1471571 (-)
G359200 NA non-coding upstream 91742 1471761 ~ 1471961 (-)
G359202 NA non-coding upstream 92280 1472299 ~ 1535242 (-)
G359178 NA other downstream 31438 1337660 ~ 1344005 (-)
CI01000152_00562189_00571618 CREMA other downstream 810159 560484 ~ 572648 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other upstream 510839 1890149 ~ 1893866 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 641520 2015257 ~ 2024292 (-)
G359788 NA other upstream 938249 2318268 ~ 2318734 (-)
G359800 NA other upstream 988973 2368992 ~ 2459836 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location