XLOC_011672


Basic Information

Item Value
gene id XLOC_011672
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44004121 ~ 44007838 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024752
ttttatttcattatttttattattataggtaGTAGTACaacagctcagggatgagcttttttgaTGGAACAGTtgtaaatgaatgtttttctttttttttatcaaattcatcaAATAATCGAAAACAtaatcaacagattaatcaattattaaaataaccgTTAGTTGCAGCCGTAATTATAACAAATGTAAGATACATTACTTGGAGTACATTTCATATACATGTCCACCTGAAAGCGATCACCCAGCAAAACACTGACAAAAACGCTTCTGTGTTTACAAAAGGAAACCTAAGAAAAAAGCGCACTGTGGCCACATGGTTTTACCTTTCTTTTATTGGTATTGTGGACCTGTGCTTTACAAGACTCAACCTTGAGAACTTTTCAACACCGTACAAGGTGTGTTACTGTCCAAACTGTAAAAGTTGTGCATATGGCGGTAGACAGTGAGAAAAATGTATTCGATTTCAAATCCGTCCTAAGACATACTTTATATgctgttgtgcaaagaactgcacaaaaaacaattatttcattGTTGATATGCCCCAGTAAGTATCATCAAGCGTGAAATAGAACAAAAGTTGTTGTAGTTGTACTTCTCTGTGGTGTACATCTTGCctacaaactgcagtcaaacatgtTTAAACCACAAACCATAACATATTTACCATTAGCATTTTTGTACCcttagcccttgaaacagagtgtgaagggttCCAAAATGTACCCCAAAGAATTGGGACAGCATTACAACACCTGCACAAGTCATTATGTCTCTCGATCTCTTCATATGAAATAGACGATggagactgctgtagttatttcagttgtgttcttttttttttttggtgtttatcttcaggaaattactAAAGACATAAATCATGTTATCATAAAGATTtcatgtggcaataagattgtaactatacAGTGCACTTACATGCATATTCATCTAAAcccatgaaaacaacattaacattatagcagtcATTGCCAGCTACTAGACCTCTCTGACGGGAATCAAGTGTCATTGAGTGACAGATGGAAAAgcatgttgtgggactgctatacaggagttattatgaATTATAGAAAGCcatgaaggggaagggctaagGGGTAGATTTTGGATTAGGCCTTTCTCCCCTGGCACCATTGAAACAGATGTTTGGCACTGGCATGGACCAACCAAAGGTGACTCATGCGAACTTTCATTGTTCCTTTTCTATACAAGGTATTATTTAGTCTTACACTCAGAAATGTTTGccgtttgtttaaactacttatttaaaatgagctgaaacaacaaaatgcTTGAGTTGTTTTAAGGGATAACTGTTTAATTTAATCcagttaaatttgtaaaaactcgattgtgtggaacccaacatttttttacacTACGAGTGATCCACTTTCAATCTtgccattacattttttttcttgtctgttcATATTTTGAACATTTACTGATTCATACatgatttttgtattttctaATACCTCCTTCCCTGACCTTTTCCCAGTTTTATTGAGACTATTTTACTGTGTGATGTCTCTCTTGCTTATTTGTCTGCTTTTGTATTCCATTCACTCCCTAGTGTGCAGATACCCAGCATTTATTCCACCTCGTGCTTATTCACTTATTCATCTTTGCCAAAATGACATGGCATATCAATTTCTGTACAGATACAAAATGTAAATGAAACCAATATATAGTGTCAGTGAAGTTTAAATTTGGGTTTTGCTCTTGACCTAAAACTGTACCCGTTTAACACTATTAGCCAACTATTATATatactagttaaaaaaaaaacctcatcaCCAGTTTTCATGTTTTGATGGTTGCAAATGACCAGGTAAGAGATATCAGAGGTGGACCCCTCACCATAATTCTCTATATATTAAAACCCCCAATAGCTACATCTTAAAAGGCGTTACATATGAAATCTCATGAATATAAAGAACAATTACCTTCAACGCATTCAACCAATTCTTTGCTTTCTTGCTTGCTTTTATGCAAAATATGTAGCAAACTATAACACCATAATTGCTGTGAACGGTCATACAAGCATTGATTGTGGTTGTGATCAACTCGGAGCCATAATGTGGCCACATATGTCCAGGGGATATCCTGGGTTATTAAACGATTAGGCTGCGCAACAAATATAACTACACACACGTACGTCAGCACTTTCATTCTGTTGTTGACAGCAACACAGTAGCATTTTTGAAACaagtttattttcacatttatttgaaGCACTTTTAAGGACCTATGTGTGTTTTCAAGTTCTTCCTATGCCTTCCAGGAATCAATGAGTCTGAGATTCAAGTACTTTCTGTATCAGAATCCTGagcaatacatgtttcacattgtccacagcctaAGATTTTCTCTCCTGGCTTCACTGAAACGGACGGTTGGCATTCGCATGAGTCaaccaaaggtttggctataggAAACTGCCCATatatattgaccctgtggagctcccgccgaacagttttggtggaaaccgGAGATTTGAGGTGCACATTTAACTCTGCTGTGAATTGGGCAGCTGTGGTTACATGGTTTTTAGATACAATCCGGGTTAGCACGCggacatccctttcagacagcttcctcttaCTTCCACAGTTattcctgttggatgtggttcgTCCTTCTTGGATGTATGCTGATGTTACTCTGGATACTGTGGCTCTTGATACACCACAAAGATCTGCTGCCTTGGTCACAGATGCACCAGAGAGACGTGCACCAACAATTTGTCCTCTTGTGAACTCTGATGTGTCACCCATAATGCTGTGTGTTggaatattttaagcaaaactgtgctattactcCACTAATCAAATCTTCACACGGTGCTCTTACAAGTGGAACTGTCTTGTTCCAGGACACAAATACAGCTGGTCTTTGAGCAGCAGTCTGAGGTCCTTTGTTGTGCGATGAATCCTCCAAGCCTCAGTCTTTAGTGCATGTTGGGGAATTATTATGCTGCTGATTTATGACTCTTGAACGTATGCGTGGTTctataataaacaaatgaacttaATCAGTAAAAGAACCACATTGTTGTGCAGAATACAACAAAAAGGTACTGCTAcagttagggctgtgcgattaatcccATCACAATTTGAAACGTTGTGATTAGCCAAAATTGCAAGAGACTGCaatatgaaatatgtattatttaaacttcccccgcccagagcaaatgcgtgactgccatatgtgtgtgacagtcttatgctgtgttcacaccagacgcggaaggagcgtcaagcgcgagtaatttacgtgttaaagggtcacgaaacaccaaaacattttttgagctgttgacagtcgtatatgtgtcccacactgctaaaaacactattaggacacctatatttcactaaaaagtgtaaattggttgtttttgcgttatttcaagcaaattcgtacttttgGATTTTCGTACttttccggtttgaaacaaatttttgaagctgcgtcacggt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024752 True 3521 lncRNA 0.38 2 44004121 44007838

Neighbor

gene id symbol gene type direction distance location
XLOC_011670 ktn1 coding upstream 2089 43926523 ~ 44002032 (+)
XLOC_011671 BX465227.2 coding upstream 62070 43941937 ~ 43942051 (+)
XLOC_011669 msh4 coding upstream 83736 43889371 ~ 43920385 (+)
XLOC_011668 zgc:66313 coding upstream 115552 43863708 ~ 43888569 (+)
XLOC_011667 FO704777.1 coding upstream 154021 43843536 ~ 43850100 (+)
XLOC_011673 peli2 coding downstream 22854 44030692 ~ 44080733 (+)
XLOC_011674 tmem260 coding downstream 107603 44115441 ~ 44194885 (+)
XLOC_011675 NA coding downstream 241612 44249450 ~ 44255927 (+)
XLOC_011676 NA coding downstream 250213 44258051 ~ 44262819 (+)
XLOC_011677 BX548045.2 coding downstream 283567 44291405 ~ 44291520 (+)
XLOC_011665 NA non-coding upstream 358161 43641817 ~ 43645960 (+)
XLOC_011662 NA non-coding upstream 438385 43561404 ~ 43565736 (+)
XLOC_011661 NA non-coding upstream 459192 43543883 ~ 43544929 (+)
XLOC_011660 NA non-coding upstream 465611 43533795 ~ 43538510 (+)
XLOC_011678 NA non-coding downstream 374495 44382333 ~ 44392787 (+)
XLOC_011683 NA non-coding downstream 753786 44761624 ~ 44763410 (+)

Expression


Co-expression Network