G358794


Basic Information

Item Value
gene id G358794
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 530590 ~ 538748 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU409262
CAGCGTCTCTGACACAATGACCCTCATTCACAGAGTCCACACCACATTCACTCAGCCTCTCTATCCTGGGTTTGAGTTCAGTTCAGTGTGTAAAAGTGGATCAAAAGTTAAACTGTAGAAATTATAAATAATTATGATACAGAGATTCTACAAATGTTTATTAGAAATTTGATAAATCAGCAACTGTCTTTTATTTTCTAATCAATAAATAAACACTGAACTTCTCAATAAAATAAAAATCTTCTCATATGATCTAATAATGACTGTTGAGTAAGAAAAAAAGTCTTCTCATACAGATGAAATTTCACATTGAACAACCCACTGTGCACACTGTTATATGGTGTTTTAAAAATGGGTTTTATAAAATCACTTGGACTAAACTGAATTTTACCAGCTGAATCCCAATGTAAGTTTCACACTTATGTAATTTTGTACTATTTGTGTTCCGTTTCAGTAAAATGTAGCCCTTCATTTATTTTCAGGAGGGCAGGAAAAATATTAAATTATTCTCTTTCAGATTTGTTATATGATAACTGTAATCCACAGTTAACAAGCAAACTAGAGATCATTAGCCTACTTTGTTGACCAATATGAATAAGTTAAAAAAAAATGCATGAAATAGTATTACTATACCAAGTAGTACAGTATCAATACATCTATATTGTTGATTTCTACAGCAAAGAATATTTTACTTGATCAGCTTTCATATGAGTCATAAATCTGCCTGCATTTTGTGTATTTTCACATTGTGAGTGTGTGTTTCTCCTGGTGTATTCTGTTTTTCTACAGGAAACACTCTGTAAATATCACTGCCAAGGCAATTCTATCAAGTCTCTTATTCTTGTCTTTATTTTTAGAGCGATTTTATTTTCTTCTTTTCATGATTGCATATCTACCAAGTTCTTTTGGATTGTCATAAGCAATAAAGCTATTAGATCAGTTAATATCTTGCTTACTTCAAATAAATCAAATGTTTCAAAAGCTACTGCCACCAAGCTTTAGGGACATACTGTACCACTTTACTTAATGTTAGGGTTTTTCATGTTTGATATGTTTGAGTTTGAGATTTTGCACTGTTATCTGGTTATGTTTCCTTTGTTCCTTGTTCTTACTCATTAGTTCGTTAATTTGGTCACACCTGTCCTGTTTTATCCCTGATTAATTTGTGTATATCTAGCCCTCAGTTTGGGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU409262 True 1192 lncRNA 0.32 2 530590 538748

Neighbor

gene id symbol gene type direction distance location
CI01000152_00518034_00527773 LRRC6 coding downstream 2817 517858 ~ 527773 (-)
CI01000152_00503530_00505951 NA coding downstream 23967 502732 ~ 506623 (-)
CI01000152_00466439_00473268 KCNQ3 coding downstream 57278 466309 ~ 473312 (-)
CI01000152_00427482_00437720 NA coding downstream 90048 427163 ~ 440542 (-)
CI01000152_00406789_00426393 NA coding downstream 104197 406368 ~ 426393 (-)
CI01000152_00562189_00571618 CREMA coding upstream 23198 560484 ~ 572648 (-)
CI01000152_00888465_00904680 NA coding upstream 349717 888465 ~ 904815 (-)
CI01000152_00906847_00916847 NA coding upstream 367520 906268 ~ 916847 (-)
CI01000152_00920046_00920561 NA coding upstream 380478 919226 ~ 920561 (-)
CI01000152_00931110_00939265 KIF5BB, KIF5B, KIF5BA coding upstream 392362 931110 ~ 939265 (-)
G358955 NA non-coding downstream 21289 509064 ~ 509301 (-)
G358938 NA non-coding downstream 110769 419454 ~ 419821 (-)
G358820 NA non-coding downstream 129678 397020 ~ 400912 (-)
G358906 NA non-coding downstream 185503 344844 ~ 345087 (-)
G358842 NA non-coding downstream 251766 276580 ~ 278824 (-)
G358803 NA non-coding upstream 71164 609912 ~ 621967 (-)
G359079 NA non-coding upstream 485302 1024050 ~ 1024250 (-)
G359080 NA non-coding upstream 485686 1024434 ~ 1118506 (-)
G359092 NA non-coding upstream 514777 1053525 ~ 1107612 (-)
G359139 NA non-coding upstream 569411 1108159 ~ 1108712 (-)
G359178 NA other upstream 798912 1337660 ~ 1344005 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other upstream 1352110 1890149 ~ 1893866 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 1482791 2015257 ~ 2024292 (-)
G359788 NA other upstream 1779520 2318268 ~ 2318734 (-)
G359800 NA other upstream 1830244 2368992 ~ 2459836 (-)

Expression


Co-expression Network