G359198


Basic Information

Item Value
gene id G359198
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1466706 ~ 1467174 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU409714
CGGGGATCCATTTGCAGCTTTATTGAGAATAGTCACCAAGGCAGACAGGGGCAAAGGCAAAGACATAAACGGGACAGGCAATGGTCGAGGCAGGCAGCAGACAAACTGTATCGGGTCACAGGCGGAGATCAGGGCAGGCAGCAAACAAACACAGTCCAGTACACAGGCAAGGTTCAGGGCAGGCAGCAGAGAATCACAACGAATAAACAATCCAACGGTAACAGGGTAAACAGTCCACCGGGGCAAATCAAGACTTCGCAATCAGGTGGTGTGTGTGTGTGTGAGTCTTTTATAGTCCAGGTAGTGTGCTAAACTGTATGTGGCAACAGGTGATTGGTGTGGAGTGTGCATGTGATTGGCAGGGAGGATTATGGGAAATGGAGTCCAGGAACTGACAGGAACAGACGGTGATCGTGACATAACGCCCCCTTCCGGAAGGCGCGTCCTCGCGGCGTAAATGGCACAGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU409714 True 469 lncRNA 0.52 1 1466706 1467174

Neighbor

gene id symbol gene type direction distance location
CI01000152_01429044_01451054 LIG1 coding downstream 15652 1428865 ~ 1451054 (-)
CI01000152_01415414_01419131 MYP0, MPZ coding downstream 46643 1415310 ~ 1420063 (-)
CI01000152_01380778_01397434 ATP1A2A coding downstream 69272 1380140 ~ 1397434 (-)
CI01000152_01375796_01378931 SDHC coding downstream 86687 1375443 ~ 1380019 (-)
CI01000152_01296980_01330911 CADM3 coding downstream 135795 1296690 ~ 1330911 (-)
CI01000152_01545763_01547190 NA coding upstream 78160 1545334 ~ 1547190 (-)
CI01000152_01557532_01565618 NA coding upstream 90051 1557225 ~ 1565618 (-)
CI01000152_01567745_01570475 PIH1D3 coding upstream 100534 1567546 ~ 1570475 (-)
CI01000152_01584481_01585153 NA coding upstream 116657 1583831 ~ 1585268 (-)
CI01000152_01755247_01760266 MAP6D1 coding upstream 287956 1755130 ~ 1760675 (-)
G359194 NA non-coding downstream 2378 1464078 ~ 1464328 (-)
G359124 NA non-coding downstream 176633 1287518 ~ 1290073 (-)
G359126 NA non-coding downstream 281373 1184246 ~ 1185333 (-)
CI01000152_01140574_01151786 NA non-coding downstream 312367 1140213 ~ 1152870 (-)
G359139 NA non-coding downstream 357994 1108159 ~ 1108712 (-)
G359199 NA non-coding upstream 2071 1469245 ~ 1471571 (-)
G359200 NA non-coding upstream 4587 1471761 ~ 1471961 (-)
G359202 NA non-coding upstream 5125 1472299 ~ 1535242 (-)
G359224 NA non-coding upstream 62553 1529727 ~ 1530773 (-)
G359236 NA non-coding upstream 88783 1555957 ~ 1556330 (-)
G359178 NA other downstream 122701 1337660 ~ 1344005 (-)
CI01000152_00562189_00571618 CREMA other downstream 901422 560484 ~ 572648 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other upstream 423684 1890149 ~ 1893866 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 554365 2015257 ~ 2024292 (-)
G359788 NA other upstream 851094 2318268 ~ 2318734 (-)
G359800 NA other upstream 901818 2368992 ~ 2459836 (-)

Expression


Co-expression Network