G359202


Basic Information

Item Value
gene id G359202
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1472299 ~ 1535242 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU409718
GGAACAAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGGTTTACTCATCAACTCTAATGGTGGGTATAAATAAGATCAAGTTAATAAAAAGTCATTTTAATGTTTTACACATTTTTATACATGAAAATAAGTAACTGCCTCTGTATTTTGGGGGGATGGGGGTGAATGTAATTATTGCATTAAGGCTTGTCCTGTGTCAGTTAAGGGGATATTTAAACCTGCTCATTTGAAATGGATGTCCACATACTTTAGCCCATTGAATAGTACACTAAAACATCATCAACATTAACAAGATATGACATTTTAAATATACTATCAATAGTGTGTGTTTCAGATATTCACTTGAGATCTGGAGATATTCTTCAGGATCTCTATCTCTCTGTCTGATATAATGTCATGATATCTGATGATGCGAGGCTCGTCCCACTCCACTTCTTCTTTCACTGGTGCGTACATCAGTCTGGGGTTTCCTCCACCTGTGCTGTACCTACAGGACAGCGCCCTCTGCCTCTTGGAGGTCTGATTTTATA
>TU409720
AAATCGCATACTTTTGCCTATTGAATAGCACACTAAAACATCAAAACTAGTAAGATATAATAAGATATTAGATTCTAAAAGTGACAAGTAAATATTTTAATGTTTTGTGTTTGTGTGTTTTATATATTCACTTGAGGTCTGGAGATGTTCTTCAGGATCTCTATCTCTCTGTCTGATATAATGTCATGATATCTGATGATTCGAGGCTCGTCCCACTCCACTTCTTCTTTCACTGGTGCGTACATCAGTCTGGGGTTTCCTCCACCTGTGCTGTACCTACAGGACAGCGCCCTCTGCCTCTTGGAGGTCTGATTTTATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU409718 False 546 lncRNA 0.37 2 1472299 1535242
TU409720 True 319 lncRNA 0.38 2 1472299 1527614

Neighbor

gene id symbol gene type direction distance location
CI01000152_01429044_01451054 LIG1 coding downstream 21245 1428865 ~ 1451054 (-)
CI01000152_01415414_01419131 MYP0, MPZ coding downstream 52236 1415310 ~ 1420063 (-)
CI01000152_01380778_01397434 ATP1A2A coding downstream 74865 1380140 ~ 1397434 (-)
CI01000152_01375796_01378931 SDHC coding downstream 92280 1375443 ~ 1380019 (-)
CI01000152_01296980_01330911 CADM3 coding downstream 141388 1296690 ~ 1330911 (-)
CI01000152_01545763_01547190 NA coding upstream 10092 1545334 ~ 1547190 (-)
CI01000152_01557532_01565618 NA coding upstream 21983 1557225 ~ 1565618 (-)
CI01000152_01567745_01570475 PIH1D3 coding upstream 32466 1567546 ~ 1570475 (-)
CI01000152_01584481_01585153 NA coding upstream 48589 1583831 ~ 1585268 (-)
CI01000152_01755247_01760266 MAP6D1 coding upstream 219888 1755130 ~ 1760675 (-)
G359200 NA non-coding downstream 338 1471761 ~ 1471961 (-)
G359199 NA non-coding downstream 728 1469245 ~ 1471571 (-)
G359198 NA non-coding downstream 5125 1466706 ~ 1467174 (-)
G359194 NA non-coding downstream 7971 1464078 ~ 1464328 (-)
G359124 NA non-coding downstream 182226 1287518 ~ 1290073 (-)
G359236 NA non-coding upstream 20715 1555957 ~ 1556330 (-)
G359226 NA non-coding upstream 36878 1572120 ~ 1575964 (-)
G359255 NA non-coding upstream 121314 1656556 ~ 1656929 (-)
G359277 NA non-coding upstream 126898 1662140 ~ 1663449 (-)
G359178 NA other downstream 128294 1337660 ~ 1344005 (-)
CI01000152_00562189_00571618 CREMA other downstream 907015 560484 ~ 572648 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other upstream 355616 1890149 ~ 1893866 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 486297 2015257 ~ 2024292 (-)
G359788 NA other upstream 783026 2318268 ~ 2318734 (-)
G359800 NA other upstream 833750 2368992 ~ 2459836 (-)

Expression


Co-expression Network