XLOC_011683


Basic Information

Item Value
gene id XLOC_011683
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44761624 ~ 44763410 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024758
agttgctggttccaTTCTCAGCTGgtccagttggcgtttctgtgtggagtttgcatgttctccccatgtttgcgttaGTTGTATTGGATGAATACAAGTGAATTGGATATTCAATTGTatttactgcataaaacatttgccggaattgttggcggttcattccgctgtggtgacccttgataaataaggggtAGATATGAAAGcccaatataatatataactatttatatAGTTATAAATTAAACAGACTTCACATATGAAGCCATACATTCCTGATTATTTGTTTACTACTCTATTTTCAGACATGCAGTATTAGATTTTATCTGACCACACAAATTTTGCCTTGTATTAGCCAATACATACATATGTAGACATCTTTAAAGCACAGAAAAGTCTTGTTGGGTTGTCTTTGTGTTTCTCTGATTGAATATACAATATAGTATTTGACCGACATGATGAAGAACCTTTGTATTTGGATGGTGCGCCTTTTATAACATCTATCTGGAGTTTAAAAAGCACACTCCCAGAGTAATTCTGTAATGATTTATCATCTATAATCATTGAGGAATTTTGAGCGTACACTTAACAAACGTGGACATGTGAGACTTACTGTATATCACATCTTGTTAAAAAGCTTGGTACTACCCCTTGATAAGAGTCGAGAAATGAAGTTATTTCTTTGTGGGCTAAATATACCAAGTTTGCTATTGTCATTtcccgtctttcggatgagacgttaaaccgaggtcctgactctctgcggtcattaaaaatcccatggcacttctcgtgaaagagcaggggtgtaaccccggtgtcctggccaaagtccctctatcggcccttacgatcatggcctcccaatcatccccttccaccgaattggctcgatcactgtctctccactccacctatagctggtgtgtggtgagcgcactggcgccgttgtcctgtggctgccgtcgcatcatccaagtggatgctgcacactggtggtagtgtggagagacccccctcatgattgtgaagcgctttgggtgtatggccatacacaataaatgcgctatataaatacacattacatttacattttacattacattgtgtaaaccattttaatattattatctggTGTTGAAAAACTGCTGTTTAGTGACTAATTAGATTAAACAACTTCATTTTACAACAATCTAATGTCATTAAGTAAGGTTTGCGGTAGTCGGTTTATACAATTTTTCACCATTACTTAACAAATCAACCCATTTTTCATCAGTAGCATTAGTCATTAAGGAAATAAGCTGCTTTTTTTCAATGTTCTTGAATTTGCACATTGTCAGAGCATCATTCGCAGAACTCTCCAGTCCCATTTGCACTTTTATGGATTTGTGCCTATTTAAGCCTGGCCTGGATAGATGCATCTATCCAACATCAACTCTTTCTTTTTCTCATTTTCTTTCTGAAAAAGCCGCAATCtagttgttcatttattaatacaattcaTGAAGGAGGCCTTGGAACACTGGaactggaaagaaaaaaaaagatttctgatcaaattaaaccaaaatgaatttttttcttccatttttgtTCATCACTGTATCTAATGAATGCCTTTTTATAAATGACATATTTTGGTTTTTACTTTAAGAGATTATACATAAGTGcatataaaattagtttttataacAATTCTGCATAAAATGTGAAACTTGGAATCACCTTTGTGTgtatttgaaattaaatgtaacAATGTGTTTGTAATAAACATTTGTATGTGCATAATA

Function

GO:

id name namespace
GO:0071901 negative regulation of protein serine/threonine kinase activity biological_process
GO:0000188 inactivation of MAPK activity biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024758 True 1787 lncRNA 0.36 1 44761624 44763410

Neighbor

gene id symbol gene type direction distance location
XLOC_011682 cipca coding upstream 44 44756247 ~ 44761580 (+)
XLOC_011681 pgfb coding upstream 9185 44697604 ~ 44752439 (+)
XLOC_011680 naa30 coding upstream 284912 44463230 ~ 44476712 (+)
XLOC_011679 ap5m1 coding upstream 307602 44441042 ~ 44454022 (+)
XLOC_011678 NA coding upstream 368837 44382333 ~ 44392787 (+)
XLOC_011684 tmem63c coding downstream 16756 44780166 ~ 44923661 (+)
XLOC_011685 coq6 coding downstream 246458 45009868 ~ 45030025 (+)
XLOC_011686 gstz1 coding downstream 343014 45106424 ~ 45114519 (+)
XLOC_011687 CU695222.2 coding downstream 414216 45177626 ~ 45180746 (+)
XLOC_011688 NA coding downstream 429770 45193180 ~ 45200541 (+)
XLOC_011677 BX548045.2 non-coding upstream 470104 44291405 ~ 44291520 (+)
XLOC_011676 NA non-coding upstream 498805 44258051 ~ 44262819 (+)
XLOC_011675 NA non-coding upstream 505697 44249450 ~ 44255927 (+)
XLOC_011672 NA non-coding upstream 753786 44004121 ~ 44007838 (+)
XLOC_011691 NA non-coding downstream 584613 45348023 ~ 45349995 (+)
XLOC_011702 dre-mir-203a non-coding downstream 1044743 45808153 ~ 45808248 (+)
XLOC_011704 NA non-coding downstream 1409269 46172679 ~ 46180237 (+)

Expression


Co-expression Network