G359277


Basic Information

Item Value
gene id G359277
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1662140 ~ 1663449 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU409816
TTCCAGTGACATTAACATTTGATAGAGGCTTTACAAAGCCTTGAGCAATTTTAATTAATACCAGAGTTACAGACCGCCAAAGCAAACTGAAATTATGCCATTAACAATTTATTCTTAAGATAAAATATTCATAGTTAAGATAAAATATTCATAATTTAAAAGGTTAAAATCAACCTAAAAATATTTTAAAACTCTAAAGGCCTAATAACAGGTCTTAAAGCTCAGGTGACCCTCATACAGGTCTAGTGCATGTGCCATATCTTTTAATAGGACAATCCTTGTGCTCAACACCATTACAACAGACAGCAAGAACTTTCTACATCTCAGAATACCATGTTTTAAACCTCTATGAAAGATGAAATACATAACACATTTGATGAATACACTCCAAATCCTTCACCAAACACAGAGATAGAGCTGTTTCTTAGCAACACAGATGGCTTCCATTCCCAGTCACACTTTCCTTTTGCTCTTTGGACGGACTGGTATCATCAAGAAGGACAGCAGGTGGACAGAGAGTTCTACAGAGATTGTGCATTAGTGTGCATGGTGACATTAGATGTAATGTCATAATTAGTTGGCCAGAACGCATTAGTGGTTCTTTCACAACAGTTCCTCATTCATCGGTGAGGTATTTCAGCAGCTCAGACTGCAGCGCTGCCATTGTTCTCCTCTGCTCCTCATCCTCCTCATCTTCATCTTCTAAAGGAGTGTCTTCGGACGTGTTCAGGTTGTTTTCGGGGTCCAAGTAGAGGATGTCTGCTCGGTGCACACATGACGTGTTGGACTCCACGTGCTCTGTGGATTCATTGCTGGAGGGAAAGACCTCTCCCCACGAGTACTCTGCTAGATTAATGGGTTGCTGTATCCACTGCAAGTCCAAGAGCTCCTCTAGAGTCGTTCTCTGATCAACCACTGGGTGTAAAAGACCAGCCAACAGGGCATACAACTCTGTAGATATCTGGCATGGAGGGTTGAGTCGGGCCTGCAGGGTTTCTTCCACACTGCAAAATGGGTTTTCACTGAACAGTAAGGTGTATAAGAGCACTCCTAGAGACCACATCTCCAGCTCTGGACCCTCGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU409816 True 1084 lncRNA 0.42 3 1662140 1663449

Neighbor

gene id symbol gene type direction distance location
CI01000152_01584481_01585153 NA coding downstream 76872 1583831 ~ 1585268 (-)
CI01000152_01567745_01570475 PIH1D3 coding downstream 91665 1567546 ~ 1570475 (-)
CI01000152_01557532_01565618 NA coding downstream 96522 1557225 ~ 1565618 (-)
CI01000152_01545763_01547190 NA coding downstream 114950 1545334 ~ 1547190 (-)
CI01000152_01429044_01451054 LIG1 coding downstream 211086 1428865 ~ 1451054 (-)
CI01000152_01755247_01760266 MAP6D1 coding upstream 91681 1755130 ~ 1760675 (-)
CI01000152_01763662_01769747 ACSM3 coding upstream 99840 1763289 ~ 1769747 (-)
CI01000152_01770267_01784486 NCAPD2 coding upstream 106642 1770091 ~ 1784486 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A coding upstream 228686 1890149 ~ 1893866 (-)
CI01000152_01905400_01907934 MUL1A coding upstream 240254 1903703 ~ 1907934 (-)
G359255 NA non-coding downstream 5211 1656556 ~ 1656929 (-)
G359226 NA non-coding downstream 86176 1572120 ~ 1575964 (-)
G359236 NA non-coding downstream 105810 1555957 ~ 1556330 (-)
G359202 NA non-coding downstream 126898 1472299 ~ 1535242 (-)
G359280 NA non-coding upstream 6344 1669793 ~ 1671034 (-)
G359281 NA non-coding upstream 8125 1671574 ~ 1672239 (-)
G359289 NA non-coding upstream 25582 1689031 ~ 1689571 (-)
G359315 NA non-coding upstream 219528 1882977 ~ 1883380 (-)
G359318 NA non-coding upstream 220105 1883554 ~ 1883942 (-)
G359178 NA other downstream 318135 1337660 ~ 1344005 (-)
CI01000152_00562189_00571618 CREMA other downstream 1096856 560484 ~ 572648 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 358090 2015257 ~ 2024292 (-)
G359788 NA other upstream 654819 2318268 ~ 2318734 (-)
G359800 NA other upstream 705543 2368992 ~ 2459836 (-)

Expression


Co-expression Network