G359884


Basic Information

Item Value
gene id G359884
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2650692 ~ 2655413 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU410506
CACTAGACCCCTGAAGGTGTGCTGTGGTATCTGGCACCAAGATGTTAGCAGCAGATCCTTTAAGTCCTGTAAGTTGTGAGGTGGGGCCTCCATGGATCGGACTTGTTTGTTCAGCACATCCCACAGATGCTCGACTGGATTGAGATCTGGGAAATTTGGAGGCCAAGTCAACACCTCAAACTCGTTGTGCTCCTTAAACCATTCCTGAACCATTTTTGCTTTGTGGCAGGGCGCATTATCCTGCTGAAAAAGGCCACAGCCACCAGGGAATGTCGTTTCCATGAAAGGGTGTACATGGTCTGCAACAATGCTTAGGTAGGTGGTACATGTCAAAGTAACATCCACATGGATGGCAGGACCCAAGGTTTCTCAGCAGAACATTGTCCAAAGCATCACATTGCCTCCGCCGGCTTGCCTTCTTCCCATAGTGCATCCTGGTACCATGTGTTCCCCAGGTAAGCGACGCACACGTACCTGGCCATCCACGTGATGTAAAAGAAAACATGATTCATCAGACCAGGCCACCTTCTTCCATTGCTCCGTGGTCCAGTTCTGATGCTCACTTGCCACCGTTGGTGCTTTCGGCATTGGACAGGGGTCAGCATGGGCACCCTGACTGGTCTGCGGCTATGCAGCCCCATACGCAACAAACTGTGATGCACTGTGTATTCTGACACCTTTCTATCAGAACCAGCATTAACTTCTTGAGCAATTTGAGCTACAGTAGATCGTCTGTTGGATCGGAATACACGGGCCAGCCTTCGCTCCCCACGTGCATCAATGAGCCTTGGCCGCCCATGACCCTGTCGCCGGTTCACCACTGTTCCTTCCTTGGGCCACTTTTGATAGATACTGACCACTGCAGACTGGGAACACCCCACAAGAGCTGCAGTTTTGGAGATGCTCTGACCCAGTCATCTAGCCATCACAATTTGGCCAAACTCACTCAAATCCTTACACTTGCTCATTTTTCCTGCTTCTAACACATCAACTTCGAGGACAAAATGTTCACTTGCTGCCTAATATAACCCACCCACTAAAAGGTGCCATGTTGAAGAGATAATCTGTGTTCTGTCATGACAACTCTCGGAGTGTTTGCCATGGTAATGGGTATGACAATGTTGATATGTTTGGTCTTGGCGGAATAGATCTGCTACGCTGCTGCTGCTTTTATTGCTGCTGCTGCAGAGCAAGTACTTGCTACTGACAAAACATACACGACACGCTGCTGTGAGCAAGTAAGACATGCTGCTGCTGTACAATATAGCGTACATGAATAACCCGTAGCAGATCTATACAGGTGGAGCTGGGGAAGGTGGAGGGTTTCTGAAGCGCGCTGCACTGCTAAGGCAAATGCTACTCATGCATTTGAAGATTGAACACGCAAGCTCATTGACTACTGATACAGCAGGAACCAATCGTCTGTGTCCTATAGATAATGATGTGATTACGAGCAGGTTGAGTTAAAGGACCTATTAGCCTGCCCATTAGAGTTTCACGCCAGAACTTTGTATTTAACTTCACCTGTCAGTGGTCATGATGTTATGCCTGATCTGTATACAGACATTCACCGGCCACTTTATTAGGTGCACTTGTGCAACTGCTCATAAACGCAAAAATCTAATCAGCCAGTCACATGGCAGAAACTCAATAGGTGTGTTCGACTTCATGCAGCGCTGCGCAGACCAATCGGTGTCTGACTTGATGCAGTGCATGCTGGTTAGAAATTTTGTTTGACTTGAGACCGCAGCGATGCCACATATGTATGGCATCAAAGTACCATGAAAGCGATTCGAGAGCAGAAATCAGAAAGTGTCTGACTTCACGTGTCCATTTTCAGCTCGTCCCCCACTGAAAGCGGCAACTATCGCTGATTACATCCAGCCACAGCTGAAGTCGAACACACCTAACGCATTTAGGCATTGAGACATGGCCAAACTGTTCACACTGAGCATCCGAATGGGGAATTAAGTATGATTAGGTGACTTAAGTGGCATTGAATGTGGCATGGTTGTTGGTGCCAAACCAGCTGGTCTGAGTATATCAATATGTGCCATGTCATTCAGTCTATGTCATGTATATGTATACAGGTAGCAGAATGTGACCCTTCCTCTCTCTTTCTATCTGTCTCTCTCTCTCTTCAAAGGATGTCACACAATAGCAAATCCATCAAAAATGTCTTTGTCTAAATGTCACCTTGGTCTCTCTTTCCTCTGGGAGGGCTGTGAGTCCTTCACTCACAGGAAGGCTGAGAACTACATTACACTGCATGTATTACAATCTGAGTCAGTTTGTCATATTTAGTGGCTAGATAATTCAATAAGCCTCGCTCTGGACTGCAGATTTACATCACGGTACTGTCCTGGTGTTATCTGATTTCAGAAGTATCATATTCAGCTGTGGATTGCATCCTGGGACAGAGGCCAAGGTCTTAGACACATAGTTTTATGTTTTACCAATTATCAAGAAACTCAGGGTCCGCCTAAAAAAGGACAATTACATTCAAGACAAATCCATGATAAGAGATCAGCTCTGCTGAAAAGATGGACAATGCTAATTCAAACTATTCCAGCCTGGTTAAAGATGGCCAAAGCTATAGTTAAAAAATGTAGTTTATCCTATTTTTTACCCACCCATGTTCCACCTCATCATTCCAAACCTGTGACCTTCTTCAATTAAAAACATCTGTTCTTGCTCATATGAAAAGGGAATCACTCTTTTTAGTTGGATTTTTTCAATGAATCAGGTCTGAATTAGGTCAAAATAATAATAAACCAATAAATAACAATAAATCAAACTCCTCTGTTTATCGAACTCATTAGCTATGTTTCCATCCACCTATTTTTATGCGCATAAAAAACTTATGAGCTCAACTGAGTCGGATACATTTTTCCGCGATACGAAAACATGCGTATAAACTACGATGGAAACACTTTTACCGAATAAATTCCTTGATGCGCATCAAAAACAACATGTGACTTTGCGATGGATCTCAGCCCAGGTGAGAAAAAGTAACGCAAAAGTAACGTAACATATTACTTTCCATAAAAAGTAACTAAGTAACATAATTAGTTACTTTTTTAGGGAGTAATGCAATATTGTAATGCATTACTTTTAAAAGTAACGTTCCTCAACACTGCACATGGACCCTTTTTACTTTTATGGTGTTTTGCAACCTTTTTGAAGCTTGAAAGCTTTAGTCCCCATTAATTGTAACTGCATGGAAAAGAGCAACCAAAAGTAAGTCATGCAGGTTATGAACAACATGAGAGTGAGTAAATGATGACCATTTTCAATTTTGGGTAAACTATCCAGAACACCAGCATCCAAAACACAACATATGCTTGCTAGCCATAAGAATCATTTCAGCAAAGCATCAGGAAGGGAACAAAACATCAAGAGACAATTTAATAAAATACTAGAACTTCTAAAGTCTAACCATCTGTTTTTTTTTGTTTTAAGAGACAGAAAGCACAGACCAAGCGGCAGATTGGAATGAGAGTCTCAATATCAGTTTTCTCTTCCTCCTTCATTGCTGCAGTGTGCCGAGCAGTTTCTCAGCTCTGCATGACATCAAACACTATGTGGTGAGTTTCAGGCTCCAGAGGGCAGATTACGGCTTAATGCCTTCAACATCTACTGCATCAGCACTATAAACACTTCACTATGTGTCTGTGAGTATGTGTGTGAGTCTAGGAATACCCCATTCTCAATTCATCTTGCTATGGATTTGGAGGATAAGTGTACAAATTTATTGTGAAAGCATGCTGCGTGACCCCTAAAATCAATTCATGCAAATCAATACACACTTACAACAAATCAATACAAAATACAATGCATTCTGTATGCACACACACATACACACACTCACACAGCATGAATAAAAAGGGGAATTCTGTACCATGCCCTTTAGCAAATGTACTCATGGAACTTAAATATTGAAATATTCATCCACAAAGAACTTCTGCAGTCTATGATGTTACCATGGGCCATTTCGCTTTCGAGCAACCATCATTTGCCTCCAGCAGATGCACTAGCGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU410506 True 4041 lncRNA 0.43 2 2650692 2655413

Neighbor

gene id symbol gene type direction distance location
CI01000152_02440117_02451100 NA coding downstream 198870 2440117 ~ 2451822 (-)
CI01000152_02427978_02434593 NA coding downstream 216099 2427519 ~ 2434593 (-)
CI01000152_02334753_02345817 GPSM2 coding downstream 304875 2334168 ~ 2345817 (-)
CI01000152_02190690_02206511 NA coding downstream 444034 2190682 ~ 2206658 (-)
CI01000152_02086974_02089993 NA coding downstream 560642 2086488 ~ 2090050 (-)
G359911 NA non-coding downstream 7365 2637714 ~ 2643327 (-)
G359819 NA non-coding downstream 30193 2618042 ~ 2620499 (-)
G359791 NA non-coding downstream 321293 2328995 ~ 2329399 (-)
G359745 NA non-coding downstream 334436 2275843 ~ 2316256 (-)
G359737 NA non-coding downstream 398453 2250480 ~ 2252239 (-)
G359925 NA non-coding upstream 31349 2686762 ~ 2688694 (-)
G359971 NA non-coding upstream 132972 2788385 ~ 2792610 (-)
G360030 NA non-coding upstream 265795 2921208 ~ 2921528 (-)
G360032 NA non-coding upstream 267416 2922829 ~ 2923365 (-)
G360035 NA non-coding upstream 272735 2928148 ~ 2928374 (-)
G359800 NA other downstream 190856 2368992 ~ 2459836 (-)
G359788 NA other downstream 331958 2318268 ~ 2318734 (-)
CI01000152_02015257_02024292 CAPN10 other downstream 625854 2015257 ~ 2024292 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other downstream 757233 1890149 ~ 1893866 (-)
G359178 NA other downstream 1306687 1337660 ~ 1344005 (-)

Expression


Co-expression Network