XLOC_011689 (ganc)


Basic Information

Item Value
gene id XLOC_011689
gene name ganc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45259259 ~ 45302962 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023196
AACCCCCTATCAGATAACTTCCTCTTCACGTAGCGGAAACATGGAGGTGAATGTGTCAACTGAGTCTATTGAGAGTGTACTAAAGTCTGAAGATAAATTTAGGAAAAACCATGAAATCTTATTTTACAGGCGACAGAGAGATAAAGCAGTGTCTCAATACTTTACCTCCTACGAAACTTTCGTCCTCACAGATGGAGGGGCCAGTCTGGAGCTCTGTGAGCGGGACTCTCAGGACCGACTGTCTCTTCAAATACGGGCAACTCAAAATGGTACCATCCGAGTGTCTATTGATGAGCTACAGCTGGTTAAACCACGCTACCAGGTTTCAGATGTTCTGGTTGGAGAGCTGAGATATGAGCCGCTGAGAGTTGAATGGAAGAAAGAGGACTGTGTATGTTTGACGTGGGGTCTGGGGCAGTACCAGCTGCTggcttttttttccccattcaaattggAGATTTCCTGTGCTGGCGAGGAGATTGTTACTCTCAACCCAGGAAATAAACTCTGTTTTGAAACTCTGCAAGATCCAGCTagCAGGTCATCTTCAAATTCATCTGAGGGAGATGAAAATTGCTGCGGGCTGTGGAAGGAAACATTCAGACAGTTTGAGGACATCAAGGCAAATGGTCCTAGTTCTGTTGGTCTGGACTTAAGTCTACATGGGTTCAACCATACATATGGTGTTCCCGAACATGCTGATACCCTGCTGTTGAAGGATACAAGTGTCTCTGAAGCGTATCGGCTGTACAACTTGGATGTGTTTGGCTATGAGATCAACAGCAGATTGGGCCTTTATGGTTCTGTCCCTCTTTTGCTCGCTCACAAGCCAGAAAGGACAGCTGGAGTGTTTTGgttgaactcatctgagactCTGGTTGATGTCAAGTACAACACTGAGCAAAATGAGGATGAGGATGAACCACCAGGGAAAAAAAGCAGAATCTCACCTCGGACTGATGTGAGATGGATATCAGAGAGCGGCACCATCGACTGCTTCATTTTGCTGGGACCCACACCTGCCCAGGTGTTCTCTCAGTATGCTCAGCTAACAGGCTATCAGGCTCTTCCTCCGCTCTTCTCCTTGGGTAATCACCAATGCCGCTGGAACTACGAGGACGAGGCTGATGTAAAAGCGGTGGATGCTGGATTTGACCTCCACGGTATCCCGTATGATGTCATTTGGCTGGACATCGAGCACACCGATGGAAAGCGCTATTTCACCTGGGACTCCAAGCGTTTCCCAAATCCAGCAGAACTTCAGCATCATCTCATGAAGAAGAAAAGAAAGCTGGTTGTTATCAGTGACCCACACATCAAGATGGATCCCGATTGGTCAATTTACTGTGAAGCTAAGAAAGGAGGCCATTTTGTGAAGAACAGAGAAGGCTTTGATTTTGAAGGAACGTGTTGGCCAGGTGAATCCTGTTATTTGGACTTCAGTAGCTCAAAGACAAGATTATGGTATGCCAGACAGTTCTCTCTAAGCAAATATGAAGGCTCAACAGAATCTTTGTTTGTGTGGAACGACATGAACGAACCTTCAGTCTTCAACGGGCCCGAACAGACCATGCCAAAAGATGCGCTTCACCATGGAGGATGGGAACATCGAGAACTGCACAACTTATATGGCTTCTATCAGCATATGGCTACATTTGAGGGCTTATTGACCCGTTCGGGTGGCACAGAGAGGCCGTTTATCCTTACACGCTCCTTCTTTGCTGGGTCTCAGAGATTAGGCGCCATCTGGACTGGGGACAATGTTGCTACCTGGGAGTACTTAAAGATTTCAATCCCCATGCTGCTGTCTCTGAGTCTGACAGGAATACAGTTTTGTGGAGctgATGTAGGGGGCTTCGTGCAGGATCCAGACCCTGAGCTTCTGGTTCGCTGGTATCAAGCAGGGGCCCTTCAGCCATTTTTCAGGGCACACTCTGCCAAAATGACCAAGCGTCGTGAGCCGTGGCTGTTTGGAGAGGAGGTGACCTCTGCGATCCGCTCTGCTGTTCAGGACAGATACTGTCTTCTGCCGTACTGGTACACACTGTTTCACCAGGCACACACAGCTGCACTTCCACCTATCAGACCCCTTTGGGTGGAGTTTCCCAAGGATACCAGCACATTTGCTGTGGAGAACCAGTACATGATTgGCGGTGCTCTCCTTGTGTGCCCTGTGACAGATCCAGGGGTCACAGAAGTCAAGGTTTTGCTCCCAGGGTCTAATGAGctGTGGTACGACACAAATACATCAGAAGTACACAAGGGTGCCAGAAGTCTGGATGTACCAGTGACTCTGACCACTGTGCTTGTTTTCCAGCGCGGGGGAACAGTGGTGCCTAGGAGAACAGCTTGTGGATCTTGTACAGCAGACCTACAGCATTATACAATCACTCTTACTGTGGCTCTGGACATTAAGGGCAAAGCTGATGGATTTCTTTATTTGGATGATGGCCACTCTTTTAATTACAGAGACCAGATGCAGTTCTGTCTGCGGCGCTTTAGCATGCAGGCCGGCAGGCTTGTCAACAGCTGTGCTAACGATAAAGGCTTGTTTGTCTCTGATGACAAAGTGGAAACGGTGGTCATTCTTGGTCTGAAAAGTGTGAAAAGGAAACCCAAGCTCAAATCAGgtgCAAAGAGGACATCGGTCATGTTTGAATTTGACAAAAAACGAGGCGTATTAACATTAAGTGGTTTGGAACTTGAAATATGCAAAGACTGGGAAATAATAATATAGCCATGGTGTTTTTTGGGGTGCTGTTTAAACCTCACGGCAGTTTATCATTGCAATGATATGTTATAGTTGTTCATTGTAATTAAATCAGTGGTTTAATATTTAAGATTCCCTCCAAAATGATTTACTACCTcaagttattttaataataatgtgatGACATTTCAGCTGTTGGGTTCTTTTATCTTTAATTTGATATAAAACTGTAGATTTGACAACATTGGAGGGACAAATGGGTTTTGAAAATATACAAAATTTGCTGTTAAACGTTTTGATTCCTAAATAAAGGATTGTCAAAGAGCAAAGTCATATCTTTTATTCATTAGCGATATAcagctattaaaaaaaattgaagacCA
>TCONS_00023197
AGATAACTTCCTCTTCACGTAGCGGAAACATGGAGGTGAATGTGTCAACTGAGTCTATTGAGAGTGTACTAAAGTCTGAAGATAAATTTAGGAAAAACCATGAAATCTTATTTTACAGATGGAGGGGCCAGTCTGGAGCTCTGTGAGCGGGACTCTCAGGACCGACTGTCTCTTCAAATACGGGCAACTCAAAATGGTACCATCCGAGTGTCTATTGATGAGCTACAGCTGGTTAAACCACGCTACCAGGTTTCAGATGTTCTGGTTGGAGAGCTGAGATATGAGCCGTAAAGCATCAACTCTATTCTCCTCCACAGGATTTGCACTTCATTTATATTTCCAGATCTGCTGCTTccagtcattcattttaaattctTTGACAGGCTGAGAGTTGAATGGAAGAAAGAGGACTGTGTATGTTTGACGTGGGGTCTGGGGCAGTACCAGCTGCTggcttttttttccccattcaaattggAGATTTCCTGTGCTGGCGAGGAGATTGTTACTCTCAACCC

Function

symbol description
ganc Predicted to enable alpha-1,4-glucosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human GANC (glucosidase alpha, neutral C).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko00500 Starch and sucrose metabolism

ZFIN:

id description
ZDB-GENE-130530-754 Predicted to enable alpha-1,4-glucosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human GANC (glucosidase alpha, neutral C).

Ensembl:

ensembl_id ENSDARG00000074556

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023196 False 3093 mRNA 0.45 24 45259259 45302962
TCONS_00023197 True 518 mRNA 0.44 4 45259270 45263464

Neighbor

gene id symbol gene type direction distance location
XLOC_011688 NA coding upstream 58718 45193180 ~ 45200541 (+)
XLOC_011687 CU695222.2 coding upstream 78513 45177626 ~ 45180746 (+)
XLOC_011686 gstz1 coding upstream 144740 45106424 ~ 45114519 (+)
XLOC_011685 coq6 coding upstream 229234 45009868 ~ 45030025 (+)
XLOC_011684 tmem63c coding upstream 335598 44780166 ~ 44923661 (+)
XLOC_011690 capn3a coding downstream 2683 45305645 ~ 45346635 (+)
XLOC_011691 NA coding downstream 45061 45348023 ~ 45349995 (+)
XLOC_011692 nenf coding downstream 92884 45395846 ~ 45402961 (+)
XLOC_011693 tagapa coding downstream 101796 45404758 ~ 45411170 (+)
XLOC_011694 ezra coding downstream 110362 45413324 ~ 45452116 (+)
XLOC_011683 NA non-coding upstream 495849 44761624 ~ 44763410 (+)
XLOC_011678 NA non-coding upstream 866472 44382333 ~ 44392787 (+)
XLOC_011677 BX548045.2 non-coding upstream 967739 44291405 ~ 44291520 (+)
XLOC_011702 dre-mir-203a non-coding downstream 505191 45808153 ~ 45808248 (+)
XLOC_011704 NA non-coding downstream 869717 46172679 ~ 46180237 (+)
XLOC_011706 NA non-coding downstream 1152828 46455790 ~ 46464176 (+)
XLOC_011708 NA non-coding downstream 1440334 46743296 ~ 46825416 (+)

Expression


Co-expression Network