G360332


Basic Information

Item Value
gene id G360332
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 3352684 ~ 3356085 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU410982
GTTGTAGTCGAGTTTGAGTTTTATTGAACCCAAAATGTTTTTGTAGATAATTTTAGCAATTGTTAAGCACTTACGACAGAATGTTGAGTTCCTCCAGACCGCAACAGAGATCCCAACTTTGTCGCAGATGGCACTGAAGGCCTCAATAGTATCGCAGAGTGCAGCAGGATCTCCATGAGTTGTACACATATCGAACATGCAGCTTTGGAAAAAACTATCTGCATTGAGAACAGATGAGCATGCTGAGAATAGGCCCTGTCTGGATGTCAGCAGACCGCAGTAAACCTCGCTGGCGTACTGCTGCTCCTCTGCATCTGTACAGACCCTAGGCAGGGTGGGCTCCTCGCACACGCTCTGCCCTACAACATTAGCGTCCTGCACAAATGACCCGTCTGGGATCTTGAAGTCGTCTTCTGTCTCCTTGTTAAAGTTGCCGCACATGCCACAGATTCTGTTGGAGTAATGGCTGGGGACGATCACCTGAACAGCACCGGATCCCATGTAGAAGACAGACAGTTTGAAATCTGTCTGAAGGACCAAAGCATGTCCCTGGGCATTAACCGTAACTCTGTTTTCCTTCAGGAGTAGAGGGATATCCGTCCAGATTCCATTAACCATGACTCTGCTCCTCTCTGTCCTCAGCATGGACACTCTCAGACCACGTATGTTGACGTTCACCTGCTGAATGGAGGAGACGTGAGAGTCCCCTTTTCTCTCATTCTGCACCTCCACTGCAAACTCTGGAAGCAACCCTGACTCATCGCAGACCTTTGACAAAACGTATGTACAAGGACTCTCAAATTGGAAGCTGACCCCATCAAAAGTAGTGTAATGTGGGTCAGAGGCCACATGGCAGGTGCCAAAGGTGTCGCTGGACCGAGAGATGTGAGAACAGATGAGTTGCTCATCAGTGCAGGTGCAACGAGTGCTTTCATGAGTCCAAAATGTGCCTCTTTGCTCACATTGTGGCCCGCATTGTCCCTTCCGGATTCCTATTCTGTCAAAGGCAGTTTCCTCATCCTCATGCAGGCCTTGTGATAGCTCAAAAATAACCTGGATGTTGTCGGATTGCTTTGTTAGAGGGATGTAAACTTGTCTCCAGTCTCCACTGTTAGAAGTCTCTGAGGTCCAAATCGGTGTCTGCAGAATGTCAACCATTAGCAAAACTTTGAGTTCAGAACTCTTCTGGGTGGGTTTATGGTACCAGAACTCCAGACAGGAGTCTTCTGAGATCTCAAGAAATCCACTCTTGAGACGAAACACACCAGATGGACTCACAGGATGGAGAGCGGTTTCCTCTGTAGCACACAGTGATTTACAAGATTTACAATTGATGCTCATCTCAATTTTTTTTTTTTTTTTTCTGTGAAAAGTTTTACCGCCTTTCAAAGTTTGCGATTTCCTCTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU410982 True 1409 lncRNA 0.47 4 3352684 3356085

Neighbor

gene id symbol gene type direction distance location
CI01000152_02440117_02451100 NA coding downstream 900862 2440117 ~ 2451822 (-)
CI01000152_02427978_02434593 NA coding downstream 918091 2427519 ~ 2434593 (-)
CI01000152_02334753_02345817 GPSM2 coding downstream 1006867 2334168 ~ 2345817 (-)
CI01000152_02190690_02206511 NA coding downstream 1146026 2190682 ~ 2206658 (-)
CI01000152_02086974_02089993 NA coding downstream 1262634 2086488 ~ 2090050 (-)
G360223 NA non-coding downstream 180633 3171827 ~ 3172051 (-)
G360074 NA non-coding downstream 286815 3029318 ~ 3065869 (-)
G360070 NA non-coding downstream 334254 3018171 ~ 3018430 (-)
G360069 NA non-coding downstream 334794 3017616 ~ 3017890 (-)
G360068 NA non-coding downstream 335241 3017216 ~ 3017443 (-)
G359800 NA other downstream 892848 2368992 ~ 2459836 (-)
G359788 NA other downstream 1033950 2318268 ~ 2318734 (-)
CI01000152_02015257_02024292 CAPN10 other downstream 1327846 2015257 ~ 2024292 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A other downstream 1459225 1890149 ~ 1893866 (-)
G359178 NA other downstream 2008679 1337660 ~ 1344005 (-)

Expression


Co-expression Network