XLOC_011692 (nenf)


Basic Information

Item Value
gene id XLOC_011692
gene name nenf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45395846 ~ 45402961 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023199
AACTGAAACTTGACGCTAGTGGAAGTTTAGAAAATTCCCAAAGCAGAAGTTTGTGTTTTGTATTAAAGTCAGAATATATTAGATTTTCCCGCATTCCCAACACGTACACATTAAAACGTTACCAAATTGTGTCCTAAAGCACCAATTCCATGTCCTGTTCCGAGACAAATGGAGCGTTTCCACCTCTTGTTGTGAAACTGATCCGAGATCAGCATCTGAATGGAAACACGCGCAGCCGCTCCCGTGACAACAAGGAAACTGAAGCCGCAGACTCGTTCCTCAACTCAAACCTCAACACGACAGTCCACAATGTTTTATTGGCGTAGTGTTTTAATATACGCGTTATTAAATGTTTGTTCTTCAAatgatagtaaaataaaaaacgcaTCGAAACCGGTGCGCCTGTTTACGGATGAGGAGTTGCAGAGATACGATGGAAGCGAGGACGGACAACCTATTTACATGGCCATTAAAGGAGTAGTGTTTGACGTCACAACTGGAAAagAGTTTTACAAAAAAGGAGCACCTTACAATGCTCTTGTAGGCAAAGACTCAACCAGAGCTGTGGCCAAAATGTCCCTTGACCCAGCCGATCTCACACACGACACTACGGGCCTCACCGAGAGTCAACTACAATCCCTTGAGAAGATTTTCACAGGCACATACAAGACAAAATACCCTGTTGTTGGATACACCAGCAGGCGTCTTCTCAATGAGGACGGGAGCCCCAATAAAGACTTCAAACCCGAAGACCAACCTCAGTTCTCCATTAAAGATGAGTTTTGATGCCTTCAAAAGTAGTTGTCCTACATTAAAATGAATTGTAATCCAAATCCGAATCAAGATGTTGTTTGTGACCTCTGACTGCAGTGCACTAGGTGGGCAAGTGTAAGTTTGAGGTTGTCTGGTGGTCTTTTCAGCCCACAGCCTAGAAAACACTATGATGCATACTGTCCTACGTGGGTTTTTCCCTGGTGGGCTGCTTTGAAGGTCATTCAAATTGAGCCACCTACAGGTGTGACTTAAAAAAACTGGTGTGGTTGATTGGCATTTTTATATGTGTTAAGTACGTTAAGGATTTAAAATGTTTATGCGGTGTAAACAAGTCTTAAAAAGTGTAAACTGGCAATACATCACTTGGTTTCTTTCACTGTACACGAGGGGAAAGTTTGGTGATTCACACTTCATTTAGAAATTGAAATTGCTCAGTGGTGAGGGGTTTCATGCTATGAATTAAAAAGTTAAGCATTGATTTTATCATTCTGCGACAACTTTTTTACTCAAGCACTCTGTCAGTCATAATTAAACTGTTTGTTTTTATCTTCACGAAGTACCCTTGATGACTTGAAATGTTTCACACTAATAAAGAGAGAGTTGTTTGTTACTAAGACTTGTTGTTCTGCAATGTTAGGTGTCATGTGGGCTACTTTTGGAATGGAAtggaattaataaaatatttagaaacaCACA
>TCONS_00023200
AACAAGGAAACTGAAGCCGCAGACTCGTTCCTCAACTCAAACCTCAACACGACAGTCCACAATGTTTTATTGGCGTAGTGTTTTAATATACGCGTTATTAAATGTTTGTTCTTCAAatgatagtaaaataaaaaacgcaTCGAAACCGGTGCGCCTGTTTACGGATGAGGAGTTGCAGAGATACGATGGAAGCGAGAGTTTTACAAAAAAGGAGCACCTTACAATGCTCTTGTAGGCAAAGACTCAACCAGAGCTGTGGCCAAAATGTCCCTTGACCCAGCCGATCTCACACACGACACTACGGGCCTCACCGAGAGTCAACTACAATCCCTTGAGAAGATTTTCACAGGCACATACAAGACAAAATACCCTGTTGTTGGATACACCAGCAGGCGTCTTCTCAATGAGGACGGGAGCCCCAATAAAGACTTCAAACCCGAAGACCAACCTCAGTTCTCCATTAAAGATGAGTTTTGATGCCTTCAAAAGTAGTTGTCCTACATTAAAATGAATTGTAATCCAAATCCGAATCAAGATGTTGTTTGTGACCTCTGACTGCAGTGCACTAGGTGGGCAAGTGTAAGTTTGAGGTTGTCTGGTGGTCTTTTCAGCCCACAGCCTAGAAAACACTATGATGCATACTGTCCTACGTGGGTTTTTCCCTGGTGGGCTGCTTTGAAGGTCATTCAAATTGAGCCACCTACAGGTGTGACTTAAAAAAACTGGTGTGGTTGATTGGCATTTTTATATGTGTTAAGTACGTTAAGGATTTAAAATGTTTATGCGGTGTAAACAAGTCTTAAAAAGTGTAAACTGGCAATACATCACTTGGTTTCTTTCACTGTACACGAGGGGAAAGTTTGGTGATTCACACTTCATTTAGAAATTGAAATTGCTCAGTGGTGAGGGGTTTCATGCTATGAATTAAAAAGTTAAGCATTGATTTTATCATTCTGCGACAACTTTTTTACTCAAGCACTCTGTCAGTCATAATTAAACTGTTTGTTTTTATCTTCACGAAGTACCCTTGATGACTTGAAATGTTTCACACTAATAAAGAGAGAGTTGTTTGTTACTAAGACTTGTTGTTCTGCAATGTTAGGTGTCATGTGGGCTACTTTTGGAATGGAAtggaattaataaaatatttagaaacaCA

Function

symbol description
nenf Predicted to be active in endomembrane system and membrane. Orthologous to human NENF (neudesin neurotrophic factor).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-129 Predicted to be active in endomembrane system and membrane. Orthologous to human NENF (neudesin neurotrophic factor).

Ensembl:

ensembl_id ENSDARG00000040192

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023199 False 1470 mRNA 0.41 4 45395846 45402961
TCONS_00023200 True 1159 nonsense_mediated_decay 0.40 3 45396094 45402959

Neighbor

gene id symbol gene type direction distance location
XLOC_011691 NA coding upstream 45851 45348023 ~ 45349995 (+)
XLOC_011690 capn3a coding upstream 49211 45305645 ~ 45346635 (+)
XLOC_011689 ganc coding upstream 92884 45259259 ~ 45302962 (+)
XLOC_011688 NA coding upstream 195305 45193180 ~ 45200541 (+)
XLOC_011687 CU695222.2 coding upstream 215100 45177626 ~ 45180746 (+)
XLOC_011693 tagapa coding downstream 1797 45404758 ~ 45411170 (+)
XLOC_011694 ezra coding downstream 10363 45413324 ~ 45452116 (+)
XLOC_011695 kcnk3b coding downstream 51982 45454943 ~ 45459207 (+)
XLOC_011696 marc1 coding downstream 69647 45472608 ~ 45518523 (+)
XLOC_011697 si:ch211-202f3.3 coding downstream 174365 45577326 ~ 45599190 (+)
XLOC_011683 NA non-coding upstream 632436 44761624 ~ 44763410 (+)
XLOC_011678 NA non-coding upstream 1003059 44382333 ~ 44392787 (+)
XLOC_011702 dre-mir-203a non-coding downstream 405192 45808153 ~ 45808248 (+)
XLOC_011704 NA non-coding downstream 769718 46172679 ~ 46180237 (+)
XLOC_011706 NA non-coding downstream 1052829 46455790 ~ 46464176 (+)
XLOC_011708 NA non-coding downstream 1340335 46743296 ~ 46825416 (+)
XLOC_011710 CU137681.6 non-coding downstream 1446288 46849249 ~ 46849346 (+)

Expression


Co-expression Network