XLOC_011693 (tagapa)


Basic Information

Item Value
gene id XLOC_011693
gene name tagapa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45404758 ~ 45411170 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023201
ACTTTCATTTTGTGTGATGCAGTGGGCTGTTTCACTTCAGTCTGTCTCAGTCTCTTGATGCTGTATGTTCGGCTCCTGAGTCAATGTAGCTTGTTGATTTTTCCAGCCACCCACAGCAGTGAATATTTTACAGTGGTAATCTCACCAAGAAGACTGAATTTATTGTTGATCCCAAAGCAGCCAACCTATGAAGGTGCTGAGTGGACTCGGCGTGCCCAAATCGTTAACCCAAAATAGCATGGACCCAATCAGCATGCCAGCCACAACCGTTCCTCTGAATACGGGACTCTCCCTTTGTCAGCAAACCAATGGCAATCTTGCCAGCATCTCCCACACTGGGAACATGAATATTAACCGAAGGCGCTGGAGGAGCATCTTTCGACGTGTTCAGAAAAAGAACAAGGATTTATATCATGCAAACAGTGAACATACCAAGAACACACTTTTTGGACGAGCCTTGTCTGAAATCTGTCAGAAAGATGGGTCTCCTCCTGAACCAATTATGGATATCCTAATTCTGCTGCAGAGAAAGGGTTTGCACACTGAGGGGGTGTTCAGGAGGGCCGGGAACACCAAAGCTGTGAAGGAGATCAAGGCGCAACTCAACGATGGGATAGAAGTGGATCTGAAGGAGCATCCGGTGATTTGGCTTGCTGATCTCATCAAGGATTTTCTCAGACATCTGCCTGGCGGTTTGTTAATGTCGGAGAAGTACAAAGACTGGATGGATGCAATGGAAAAGGAGGATGAGGATCAGAAATGCGCTGAAATTAAAATGCTGATCAACACACTGCCTGTGCCAAACATTCAGCTCTTGAAGCACCTGATTGTCCTACTGTTCTTAATAAGTGAGAAGGCAGATACAAACAAGATGGTTTCCACCAATCTAGCCACGTGTGTTTCCCCAAACCTGCTCCAAACAGACAGCAACATAGAGAAGATGGAAGAGGTGACGAAACTGACGGCTTTCCTTATTGACAACTGCAGTCGGATTTTTGGTGATGATGCGCTGACGCTCTATGAAGATTCTGATGAAGATGAACTCAGCGATAACCAAGACTCTTTTTCCTCGCACCATCACGACTCTGCGTACGACAGTAATGACCCCGATGCAGACACCTACAAGGGCAGTTGTTCAGATATGGACTCTATCAAATCTGGCGTTGAAGAAAAAGCCCAGGAACCTGAAGAACCCTGGACAACCCAACTCCTGATCCGCAGACGTTCAGAACCAACGTTCAACTTCACCCAGACGGTTCAGCAGCATCTCTCCAGCAGCCAGACGGAAGTGGACTTTCATGAAAAGCAGTTAAAAAAGCAGATCTCCGATGACTGTATTGTGTTCAGGGCGGGGAACAGCTTTGGGAAAAGATGTGGTCTGGCACGCTCAAGCGCTTCCAGGACCACCTCCAGAGGCTGCTCGTATTGTTCCTCGAGTTCACTGGAGAGCTGTTTCTCCAGCGCCTCAGAGAGCTCCATCCACAACAGTCCTTCTCCCCTGCCTTCGTCCAAAAAAAACATCCAACGCAAACATTCCTTCCCTACTCCGAACCGCTCAGAAACCCCCAGAAAACGCTCGCAGTCAATGAAGAGTGCACACCTCAGGAGCAGGACTGTTTTCGGGCGAAGCGGCTCCACCAAACGGGCCATCGAAAGAACCTTAAGAGAAAGTGAGACTCTCCCCGAGGTGCTGACTCCTCAACCGGAGCCCAGACGCTTGTCCAGCGATGAGGTTTTCCAGCAGGTGGACAGCAGGATACCAAGCAGCCCTCCGAGTTATGAGCAAGCCGTTCAGAACAATTCCCCTGCAGCTCTTTCCTGTTGCAGATCGCTGACCGTTCAGGATGCCAGATGTTTGTCAAAGCAAACGTGCAGcggctccagatcttcaagtgAGGAGACTTTGGATTTCTCTTCTGGACTTGCTGATATCCACAACAGAGACAATGCTGAGGCATGCTGTGATGGTATGAGTGGATCCTCCTCATGTTTGAGACAGAGGTCCTCATCTGAATCTATGTATGAAGAACACATCAGAGAGTCATACGTCTGATTCtgacttgtttttattttctactttttGAATACGACCTCATAATGAGGGATTGGCATTTCAGTTGTTTTGAATGTAACTCAGGGATAATGTGCTCAATGTGTTGCGTCTTTACTTTCATTacactgctttgttttttttggtgattttttttgtaCCCACCGTGCAACAAAATTGTGACTGAAAAGCACTTTGAGGAAATTTCACTACACAGGTTCACAGTTTTTGAGTTTTCAAAAATAAAGTGGATGCTTAGAAATATATGTAAACCATATATGCCttctaatgaaataaaaatatgttttgctaTGCA
>TCONS_00023203
GTAATCTCACCAAGAAGACTGAATTTATTGTTGATCCCAAAGCAGCCAACCTATGAAGGTGCTGAGTGGACTCGGCGTGCCCAAATCGTTAACCCAAAATAGCATGGACCCAATCAGCATGCCAGCCACAACCGTTCCTCTGAATACGGGACTCTCCCTTTGTCAGCAAACCAATGGCAATCTTGCCAGCATCTCCCACACTGGGAACATGAATATTAACCGAAGGCGCTGGAGGAGCATCTTTCGACGTGTTCAGAAAAAGAACAAGGATTTATATCATGCAAACAGTGAACATACCAAGAACACACTTTTTGGACGAGCCTTGTCTGAAATCTGTCAGAAAGATGGGTCTCCTCCTGAACCAATTATGGATATCCTAATTCTGCTGCAGAGAAAGGGTTTGCACACTGAGGGGGTGTTCAGGAGGGCCGGGAACACCAAAGCTGTGAAGGAGATCAAGGCGCAACTCAACGATGGGATAGAAGTGGATCTGAAGGAGCATCCGGTGATTTGGCTTGCTGATCTCATCAAGGATTTTCTCAGACATCTGCCTGGCGGTTTGTTAATGTCGGAGAAGTACAAAGACTGGATGGATGCAATGGAAAAGGAGGATGAGGATCAGAAATGCGCTGAAATTAAAATGCTGATCAACACACTGCCTGTGCCAAACATTCAGCTCTTGAAGCACCTGATTGTCCTACTGTTCTTAATAAGTGAGAAGGCAGATACAAACAAGATGGTTTCCACCAATCTAGCCACGTGTGTTTCCCCAAACCTGCTCCAAACAGACAGCAACATAGAGAAGATGGAAGAGGTGACGAAACTGACGGCTTTCCTTATTGACAACTGCAGTCGGATTTTTGGTGATGATGCGCTGACGCTCTATGAAGATTCTGATGAAGATGAACTCAGCGATAACCAAGACTCTTTTTCCTCGCACCATCACGACTCTGCGTACGACAGTAATGACCCCGATGCAGACACCTACAAGGGCAGTTGTTCAGATATGGACTCTATCAAATCTGGCGTTGAAGAAAAAGCCCAGGAACCTGAAGAACCCTGGACAACCCAACTCCTGATCCGCAGACGTTCAGAACCAACGTTCAACTTCACCCAGACGGTTCAGCAGCATCTCTCCAGCAGCCAGACGGAAGTGGACTTTCATGAAAAGCAGTTAAAAAAGCAGATCTCCGATGACTGTATTGTGTTCAGGGCGGGGAACAGCTTTGGGAAAAGATGTGGTCTGGCACGCTCAAGCGCTTCCAGGACCACCTCCAGAGGCTGCTCGTATTGTTCCTCGAGTTCACTGGAGAGCTGTTTCTCCAGCGCCTCAGAGAGCTCCATCCACAACAGTCCTTCTCCCCTGCCTTCGTCCAAAAAAAACATCCAACGCAAACATTCCTTCCCTACTCCGAACCGCTCAGAAACCCCCAGAAAACGCTCGCAGTCAATGAAGAGTGCACACCTCAGGAGCAGGACTGTTTTCGGGCGAAGCGGCTCCACCAAACGGGCCATCGAAAGAACCTTAAGAGAAAGTGAGACTCTCCCCGAGGTGCTGACTCCTCAACCGGAGCCCAGACGCTTGTCCAGCGATGAGGTTTTCCAGCAGGTGGACAGCAGGATACCAAGCAGCCCTCCGAGTTATGAGCAAGCCGTTCAGAACAATTCCCCTGCAGCTCTTTCCTGTTGCAGATCGCTGACCGTTCAGGATGCCAGATGTTTGTCAAAGCAAACGTGCAGcggctccagatcttcaagtgAGGAGACTTTGGATTTCTCTTCTGGACTTGCTGATATCCACAACAGAGACAATGCTGAGGCATGCTGTGATGGTATGAGTGGATCCTCCTCATGTTTGAGACAGAGGTCCTCATCTGAATCTATGTATGAAGAACACATCAGAGAGTCATACGTCTGATTCtgacttgtttttattttctactttttGAATACGACCTCATAATGAGGGATTGGCATTTCAGTTGTTTTGAATGTAACTCAGGGATAATGTGCTCAATGTGTTGCGTCTTTACTTTCATTacactgctttgttttttttggtgattttttttgtaCCCACCGTGCAACAAAATTGTGACTGAAAAGCACTTTGAGGAAATTTCACTACACAGGTTCACAGTTTTTGAGTTTTCAAAAATAAAGTGGATGCTTAGAAATATATGTAAACCATATATGCCttctaatgaaataaaaatatgttttgctaTGCACATCATGCTCTTtgagtctttctttctttctttctttctttccaaacAACGTAATAATAATATGATGGATTTACAATTTCATGCTGGTGTCTATAACTGAAAagtatataaaagaaaaacacaaaactataaagaaataataagaaaaacattaaattctTTTTCATCAGTTTATTGCATAAGATGAATTAtcatgttaaaatgtttaaaaaatctttttattacAAAGTAATAATacgtatataaatatacatatatgcagttgcaatcagaattattagccacctgtttatttttcctcaatttctgtttaacggagagaagatttcttcaacacatttctaaacaatagttttaataactcatttctaataactgatttattttatctttgccatgatgacattaaataatatttgactagatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattgggttaactaggcaggatagagtaattaggc
>TCONS_00023202
GTAATCTCACCAAGAAGACTGAATTTATTGTTGATCCCAAAGCAGCCAACCTATGAAGGTGCTGAGTGGACTCGGCGTGGTAAGTTTCCACCTTCACCCATCAGTTTCACACACACCTTTTGTCTCTTAATGTCATCATGGAAACTGATGAGTATGTATTTGAATTGACTTACTTCCCTAGATCTCATTGACAGGATAAAcaattcttttgttctttctgttTCAGCCCAAATCGTTAACCCAAAATAGCATGGACCCAATCAGCATGCCAGCCACAACCGTTCCTCTGAATACGGGACTCTCCCTTTGTCAGCAAACCAATGGCAATCTTGCCAGCATCTCCCACACTGGGAACATGAATATTAACCGAAGGCGCTGGAGGAGCATCTTTCGACGTGTTCAGAAAAAGAACAAGGATTTATATCATGCAAACAGTGAACATACCAAGAACACACTTTTTGGACGAGCCTTGTCTGAAATCTGTCAGAAAGATGGGTCTCCTCCTGAACCAATTATGGATATCCTAATTCTGCTGCAGAGAAAGGGTTTGCACACTGAGGGGGTGTTCAGGAGGGCCGGGAACACCAAAGCTGTGAAGGAGATCAAGGCGCAACTCAACGATGGGATAGAAGTGGATCTGAAGGAGCATCCGGTGATTTGGCTTGCTGATCTCATCAAGGATTTTCTCAGACATCTGCCTGGCGGTTTGTTAATGTCGGAGAAGTACAAAGACTGGATGGATGCAATGGAAAAGGAGGATGAGGATCAGAAATGCGCTGAAATTAAAATGCTGATCAACACACTGCCTGTGCCAAACATTCAGCTCTTGAAGCACCTGATTGTCCTACTGTTCTTAATAAGTGAGAAGGCAGATACAAACAAGATGGTTTCCACCAATCTAGCCACGTGTGTTTCCCCAAACCTGCTCCAAACAGACAGCAACATAGAGAAGATGGAAGAGGTGACGAAACTGACGGCTTTCCTTATTGACAACTGCAGTCGGATTTTTGGTGATGATGCGCTGACGCTCTATGAAGATTCTGATGAAGATGAACTCAGCGATAACCAAGACTCTTTTTCCTCGCACCATCACGACTCTGCGTACGACAGTAATGACCCCGATGCAGACACCTACAAGGGCAGTTGTTCAGATATGGACTCTATCAAATCTGGCGTTGAAGAAAAAGCCCAGGAACCTGAAGAACCCTGGACAACCCAACTCCTGATCCGCAGACGTTCAGAACCAACGTTCAACTTCACCCAGACGGTTCAGCAGCATCTCTCCAGCAGCCAGACGGAAGTGGACTTTCATGAAAAGCAGTTAAAAAAGCAGATCTCCGATGACTGTATTGTGTTCAGGGCGGGGAACAGCTTTGGGAAAAGATGTGGTCTGGCACGCTCAAGCGCTTCCAGGACCACCTCCAGAGGCTGCTCGTATTGTTCCTCGAGTTCACTGGAGAGCTGTTTCTCCAGCGCCTCAGAGAGCTCCATCCACAACAGTCCTTCTCCCCTGCCTTCGTCCAAAAAAAACATCCAACGCAAACATTCCTTCCCTACTCCGAACCGCTCAGAAACCCCCAGAAAACGCTCGCAGTCAATGAAGAGTGCACACCTCAGGAGCAGGACTGTTTTCGGGCGAAGCGGCTCCACCAAACGGGCCATCGAAAGAACCTTAAGAGAAAGTGAGACTCTCCCCGAGGTGCTGACTCCTCAACCGGAGCCCAGACGCTTGTCCAGCGATGAGGTTTTCCAGCAGGTGGACAGCAGGATACCAAGCAGCCCTCCGAGTTATGAGCAAGCCGTTCAGAACAATTCCCCTGCAGCTCTTTCCTGTTGCAGATCGCTGACCGTTCAGGATGCCAGATGTTTGTCAAAGCAAACGTGCAGcggctccagatcttcaagtgAGGAGACTTTGGATTTCTCTTCTGGACTTGCTGATATCCACAACAGAGACAATGCTGAGGCATGCTGTGATGGTATGAGTGGATCCTCCTCATGTTTGAGACAGAGGTCCTCATCTGAATCTATGTATGAAGAACACATCAGAGAGTCATACGTCTGATTCtgacttgtttttattttctactttttGAATACGACCTCATAATGAGGGATTGGCATTTCAGTTGTTTTGAATGTAACTCAGGGATAATGTGCTCAATGTGTTGCGTCTTTACTTTCATTacactgctttgttttttttggtgattttttttgtaCCCACCGTGCAACAAAATTGTGACTGAAAAGCACTTTGAGGAAATTTCACTACACAGGTTCACAGTTTTTGAGTTTTCAAAAATAAAGTGGATGCTTAGAAATATATGTAAACCATATATGCCttctaatgaaataaaaatatgttttgctaTGCACATCATGCTCTTtgagtctttctttctttctttctttctttccaaacAACGTAATAATAATATGATGGATTTACAATTTCATGCTGGTGTCTATAACTGAAAagtatataaaagaaaaacacaaaactataaagaaataataagaaaaacattaaattctTTTTCATCAGTTTATTGCATAAGATGAATTAtcatgttaaaatgtttaaaaaatctttttattacAAAGTAATAATacgtatataaatatacatatatgcagttgcaatcagaattattagccacctgtttatttttcctcaatttctgtttaacggagagaagatttcttcaacacatttctaaacaatagttttaataactcatttctaataactgatttattttatctttgccatgatgacattaaataatatttgactagatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattgggttaactaggcaggatagagtaattaggc

Function

symbol description
tagapa Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus 21. Orthologous to human TAGAP (T cell activation RhoGTPase activating protein).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1877 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus 21. Orthologous to human TAGAP (T cell activation RhoGTPase activating protein).

Ensembl:

ensembl_id ENSDARG00000002353

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023201 False 2366 mRNA 0.46 10 45404758 45410653
TCONS_00023203 False 2748 mRNA 0.43 9 45405821 45411170
TCONS_00023202 True 2895 mRNA 0.42 8 45405821 45411170

Neighbor

gene id symbol gene type direction distance location
XLOC_011692 nenf coding upstream 1797 45395846 ~ 45402961 (+)
XLOC_011691 NA coding upstream 54763 45348023 ~ 45349995 (+)
XLOC_011690 capn3a coding upstream 58123 45305645 ~ 45346635 (+)
XLOC_011689 ganc coding upstream 101796 45259259 ~ 45302962 (+)
XLOC_011688 NA coding upstream 204217 45193180 ~ 45200541 (+)
XLOC_011694 ezra coding downstream 2154 45413324 ~ 45452116 (+)
XLOC_011695 kcnk3b coding downstream 43773 45454943 ~ 45459207 (+)
XLOC_011696 marc1 coding downstream 61438 45472608 ~ 45518523 (+)
XLOC_011697 si:ch211-202f3.3 coding downstream 166156 45577326 ~ 45599190 (+)
XLOC_011698 si:ch211-202f3.4 coding downstream 191470 45602640 ~ 45621301 (+)
XLOC_011687 CU695222.2 non-coding upstream 224012 45177626 ~ 45180746 (+)
XLOC_011683 NA non-coding upstream 641348 44761624 ~ 44763410 (+)
XLOC_011678 NA non-coding upstream 1011971 44382333 ~ 44392787 (+)
XLOC_011702 dre-mir-203a non-coding downstream 396983 45808153 ~ 45808248 (+)
XLOC_011704 NA non-coding downstream 761509 46172679 ~ 46180237 (+)
XLOC_011706 NA non-coding downstream 1044620 46455790 ~ 46464176 (+)
XLOC_011708 NA non-coding downstream 1332126 46743296 ~ 46825416 (+)
XLOC_011710 CU137681.6 non-coding downstream 1438079 46849249 ~ 46849346 (+)

Expression


Co-expression Network