XLOC_011695 (kcnk3b)


Basic Information

Item Value
gene id XLOC_011695
gene name kcnk3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45454943 ~ 45459207 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023205
AAAGAACAGCTCCCACTAAACACACTTCTTTTAATAGCGGTTCCTTGTGGCAGCTTATTTTCAGGAGACCCTCAGCTGGAATGACTCTCGCTGCCAAGAGCTACAAGCCATGAATCAGGAAAGTTCCCATGCCCGAGCCGGAGCTTTGAAAACTGAGGGATATTTTGAGGCGACTATGAGAAGATGAAGAGGCAAAACGTGCGGACACTCGCCTTAATCATCTGCACTTTGTCCTATTTGCTCATCGGAGCGGGAGTTTTCGACGCTCTCGAGTCAAAGCAAGAGAAAAGCCAGAAGGGCAGACTCGACTACCGCAAATTCCTGCTCATGCATAAATACAACCTCACCAGGCTTGACTTTGATCAGATTGAGAAGGTCGTGTTGCTCCTGAAGCCCCACAAAGCAGGAGTCCAGTGGAAGTTCTCCGGGTCTTTCTATTTCGCCATCACTGTGATAACAACCATAGGTTATGGCCATGCCGCCCCCAGTACGGATGCCGGTAAGGCATTCTGCATGGGGTATGCACTTCTGGGCATCCCCCTCACCCTGGTGATGTTCCAGAGCCTGGGCGAACGCATTAACACCTTCGTCCGCTTCCTGTTGCACAAAGCCAAGAAATGCATGGGCCTGCGGCGGCCGGAAGTCTCCATGGCCAACATGGTGATCATCGGCTTTTTCTCCTGCGTCAGCACCTTGTGCATAGGAGCAGCTGCCTTTTCCCACTACGAAGGTTGGACCTTTTTCCATGCCTTCTACTACTGCTTCATCACCCTCACCACCATCGGTTTTGGCGACTACGTAGCCCTACAAAAGGACAACGCTCTCCAGAACGACCCTCATTATGTGGCCTTCAGTTTTGTCTACATTCTGATGGGCCTCACAGTCATCGGTGCTTTCCTCAATTTAGTGGTGCTACGCTTCATGACCATGAACACAGAGGACGAGAGAAGAGATGCCGAGCAGAGAGCGCTGCTCTCCAAAGATAAACACCAAGGTCCAGTATTACGCCGTGCAGAACCTCCGAGCCCATCCGCTGTGGGCCGAGACAAAAGACGAGGGCTGAAGAGCGTCTACGCCGAGGTGCTCCACTTCCAGACGGTGTGCTCCTGCCTGTGGTACAGAAGCCGAGAGAAATTGGTCATCCTCCCACAGGATCTGTCATTCACTGATGCGCTTATGGAGCAAGGAGATGTATCGCCCCATCACTTCTTCGAAAACGGCCCTACGGGCTGCGTGTGTAACCCTCAACGCTGCTCGGCCATTAGCACTGTGTCTGCTGACCTGAGAAACATCTCGCCGTTCAGGCTCTTCTCCAAAAGACGCAGCTCTGTCTGAATCACCTCACTTTCTTACACAGTCCTGTAGATCTTTATTGAGTCACAtgatttattttcacattatGAAATGCTTGAATGAACCACTCAAGACTGAGTCTTCTTACACAAACACATCTATGCTCTATAAACACTTTGGATGTTGATATTCTTCAAATTTACACCTTAAAATGGTGCAATAGACTtacaatcattttaaaatatagtctGCCCAAAAAAAGTCTGATGTGGAATATAAGTGTAAGCTGTTCGTCTGAAA

Function

symbol description
kcnk3b Predicted to enable potassium ion leak channel activity. Acts upstream of or within heart contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system and heart. Human ortholog(s) of this gene implicated in primary pulmonary hypertension. Orthologous to human KCNK3 (potassium two pore domain channel subfamily K member 3).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030322 stabilization of membrane potential biological_process
GO:0060047 heart contraction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022841 potassium ion leak channel activity molecular_function
GO:0005252 open rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120709-43 Predicted to enable potassium ion leak channel activity. Acts upstream of or within heart contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system and heart. Human ortholog(s) of this gene implicated in primary pulmonary hypertension. Orthologous to human KCNK3 (potassium two pore domain channel subfamily K member 3).

Ensembl:

ensembl_id ENSDARG00000052898

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023205 True 1593 mRNA 0.49 2 45454943 45459207

Neighbor

gene id symbol gene type direction distance location
XLOC_011694 ezra coding upstream 2827 45413324 ~ 45452116 (+)
XLOC_011693 tagapa coding upstream 43773 45404758 ~ 45411170 (+)
XLOC_011692 nenf coding upstream 51982 45395846 ~ 45402961 (+)
XLOC_011691 NA coding upstream 104948 45348023 ~ 45349995 (+)
XLOC_011690 capn3a coding upstream 108308 45305645 ~ 45346635 (+)
XLOC_011696 marc1 coding downstream 13401 45472608 ~ 45518523 (+)
XLOC_011697 si:ch211-202f3.3 coding downstream 118119 45577326 ~ 45599190 (+)
XLOC_011698 si:ch211-202f3.4 coding downstream 143433 45602640 ~ 45621301 (+)
XLOC_011699 vcpkmt coding downstream 180040 45639247 ~ 45647054 (+)
XLOC_011700 zgc:162184 coding downstream 189629 45648836 ~ 45678386 (+)
XLOC_011688 NA non-coding upstream 254402 45193180 ~ 45200541 (+)
XLOC_011687 CU695222.2 non-coding upstream 274197 45177626 ~ 45180746 (+)
XLOC_011683 NA non-coding upstream 691533 44761624 ~ 44763410 (+)
XLOC_011678 NA non-coding upstream 1062156 44382333 ~ 44392787 (+)
XLOC_011702 dre-mir-203a non-coding downstream 348946 45808153 ~ 45808248 (+)
XLOC_011704 NA non-coding downstream 713472 46172679 ~ 46180237 (+)
XLOC_011706 NA non-coding downstream 996583 46455790 ~ 46464176 (+)
XLOC_011708 NA non-coding downstream 1284089 46743296 ~ 46825416 (+)
XLOC_011710 CU137681.6 non-coding downstream 1390042 46849249 ~ 46849346 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000315_01142173_01148181 KCNK3B coding CI01000315 null 1141750 ~ 1148419 (+)
bowfin (Amia calva) AMCG00008157 NA coding CM030123.1 CM030123.1 44106455 ~ 44131719 (+)