XLOC_011702 (dre-mir-203a)


Basic Information

Item Value
gene id XLOC_011702
gene name dre-mir-203a
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45808153 ~ 45808248 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023226
GTGTTTGGGTCTCTTCTGGTCCCTCTGGTGCAGTGGTTCTTAACAGTTCAACAGTTCTATctcaaaattgtgaaatgtttaggACCACTTGACCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081779

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023226 True 96 miRNA 0.44 1 45808153 45808248

Neighbor

gene id symbol gene type direction distance location
XLOC_011701 aspg coding upstream 33143 45737992 ~ 45775010 (+)
XLOC_011700 zgc:162184 coding upstream 129767 45648836 ~ 45678386 (+)
XLOC_011699 vcpkmt coding upstream 161099 45639247 ~ 45647054 (+)
XLOC_011698 si:ch211-202f3.4 coding upstream 186852 45602640 ~ 45621301 (+)
XLOC_011697 si:ch211-202f3.3 coding upstream 208963 45577326 ~ 45599190 (+)
XLOC_011703 kif26ab coding downstream 7105 45815353 ~ 45989466 (+)
XLOC_011704 NA coding downstream 364431 46172679 ~ 46180237 (+)
XLOC_011705 si:dkey-206p8.1 coding downstream 578838 46387086 ~ 46439252 (+)
XLOC_011706 NA coding downstream 647542 46455790 ~ 46464176 (+)
XLOC_011707 pimr22 coding downstream 931445 46739693 ~ 46740881 (+)
XLOC_011691 NA non-coding upstream 458158 45348023 ~ 45349995 (+)
XLOC_011688 NA non-coding upstream 607612 45193180 ~ 45200541 (+)
XLOC_011687 CU695222.2 non-coding upstream 627407 45177626 ~ 45180746 (+)
XLOC_011683 NA non-coding upstream 1044743 44761624 ~ 44763410 (+)
XLOC_011678 NA non-coding upstream 1415366 44382333 ~ 44392787 (+)
XLOC_011708 NA non-coding downstream 935048 46743296 ~ 46825416 (+)
XLOC_011710 CU137681.6 non-coding downstream 1041001 46849249 ~ 46849346 (+)
XLOC_011711 CU137681.1 non-coding downstream 1042778 46851026 ~ 46854102 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G159553 NA non-coding CI01000030 null 3819821 ~ 3820046 (+)
grasscarp (Ctenopharyngodon idella) G244044 NA non-coding CI01000057 null 2713054 ~ 2713474 (+)
grasscarp (Ctenopharyngodon idella) G447077 NA non-coding CI01000315 null 1379108 ~ 1382477 (+)
rainbow trout (Oncorhynchus mykiss) G158617 NA non-coding NC_048566.1 CM023220.2 53689174 ~ 53689596 (+)
eurasian perch (Perca fluviatilis) G134623 NA non-coding NC_053124.1 CM020921.1 18297387 ~ 18303527 (-)
eurasian perch (Perca fluviatilis) G204522 NA non-coding NC_053131.1 CM020928.1 20505219 ~ 20505622 (-)
tiger barb (Puntius tetrazona) G122624 NA non-coding NC_056715.1 CM032084.1 20639766 ~ 20641753 (+)