XLOC_011704


Basic Information

Item Value
gene id XLOC_011704
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 46172679 ~ 46180237 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024499
gccgatcacacctaATACGATTTATGCGTTGTGTAACAGCCCGGTTGGAGAAATAAAAGGAATAAACTCATGCACTGATGTTGCACTGTCCTCCTTTGTGCCTTTATTGTTGTGATAGCCGTCCTTAAAGACTGTACAACACCGTAAGAGCTAAGAACAGatgaataaacacaaatagaAAAGATGTAATGAATAATAGTTCACATaataagacaaaacaataaacttaGTGACAATATTATAAAGTATCTGCAAATATATGACTAATTTTACGATAAAATAGCAATTTAAATTATTAGCAAGCTAACAGATGCATCAAATTTTAGCAATATGTATAAAAAAATGTCCTCATCTACCTTGTTCTCCCTTCCAACCAGGTGTTCAAACAATGAAGatgaacagaacaaaaaacaaactcaaatatGCATTAAATCTCTCCTAAATCAGTCCTTAAATGTAACATTAGCTCCGTGCATTTCTCTGTGCAAGCGATCGCTCTCTCCCTCGTGCTAGGCGCGCTTCTCCGATCTCCCTGCTTCCGTGATCTGCGCGCGCTCGCGCACCTGACCACTTCCGGCAAGCCGCGCGTCAAAATAAGGGTCTCTATAGGCTAAATAACTTAGTGCAAAGCGGagttcaaataaataacaaaaacacaacaattttttaaagaaatagagAAGTAATTAAAAGCAGCATAAATAATTAAGACTGAAACCTAACTTAAATAACTTGGGGTTATTTACACGTTGAGAG

Function

GO:

id name namespace
GO:0031224 intrinsic component of membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024499 True 756 lncRNA 0.37 2 46172679 46180237

Neighbor

gene id symbol gene type direction distance location
XLOC_011703 kif26ab coding upstream 183213 45815353 ~ 45989466 (+)
XLOC_011702 dre-mir-203a coding upstream 364431 45808153 ~ 45808248 (+)
XLOC_011701 aspg coding upstream 397669 45737992 ~ 45775010 (+)
XLOC_011700 zgc:162184 coding upstream 494293 45648836 ~ 45678386 (+)
XLOC_011699 vcpkmt coding upstream 525625 45639247 ~ 45647054 (+)
XLOC_011705 si:dkey-206p8.1 coding downstream 206849 46387086 ~ 46439252 (+)
XLOC_011706 NA coding downstream 275553 46455790 ~ 46464176 (+)
XLOC_011707 pimr22 coding downstream 559456 46739693 ~ 46740881 (+)
XLOC_011708 NA coding downstream 563059 46743296 ~ 46825416 (+)
XLOC_011709 pimr14 coding downstream 638284 46818521 ~ 46820429 (+)
XLOC_011691 NA non-coding upstream 822684 45348023 ~ 45349995 (+)
XLOC_011688 NA non-coding upstream 972138 45193180 ~ 45200541 (+)
XLOC_011687 CU695222.2 non-coding upstream 991933 45177626 ~ 45180746 (+)
XLOC_011683 NA non-coding upstream 1409269 44761624 ~ 44763410 (+)
XLOC_011710 CU137681.6 non-coding downstream 669012 46849249 ~ 46849346 (+)
XLOC_011711 CU137681.1 non-coding downstream 670789 46851026 ~ 46854102 (+)
XLOC_011713 CU137681.2 non-coding downstream 731653 46911890 ~ 46920595 (+)

Expression


Co-expression Network