XLOC_011705 (si:dkey-206p8.1)


Basic Information

Item Value
gene id XLOC_011705
gene name si:dkey-206p8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 46387086 ~ 46439252 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023231
CTCAAATCTCGCCCGTTCTGCGATGCGCGTGGGCGGCGCTGATCTCGGTGCGTCTCCTTTCCTCTCCTCCACCCACAAATCCCTCTCTACCTCCAGCCCACGCACCCACGCCTCCTGCCCTTGACGAGGAAGAGCAGAAGCAGCATTGATGTGTTCCCGTTTTAAGCGCACAGTGACCCATCTTTCAGCGTCCGACTGCGTTTTCCGAGCGTCTCCGTTTCTCCATGCGCGCGCCGCGGCTCAGATGGGAGACGTAAGTGAAGCTTCTGACTGGCACGGGAACGCACGCGGTGGGTCTCTCTGGTGGGCCATCCCGAGCACGGGATGCTGAACGGGAGCCGCGAGGGTTTGTTTGAACTAGGCAGGCAGCTCCAGCAGGACGGAGACTCCCAAGCCGCACTGCACTGCTTTCTAAGCTGCCTGCTGGGACTCACACATGTGCAGAGCTTCCACTCGCTTCCCAACTGCCTgcatcagATTGCTGAACTTTACATTGATGAGAAGAACTATGGGAAAGCTCTGCAGTTCATTCAGGCGGAGAAGATGTTCTATGAAGTGGCATTGATCGAGCTCACATCGCTGCAGGCCAGCACAGGGTCTCAGGAAGACGGGACATTGGGGTCGTCAGGATGTCTGTCTCAAGAGGAGCTATCAGAACAGGCTTCACAGGCCCAGGATCTTGAGAGACTGGCGCAGCTCTGCATCATGAGCAAAAGACCCCATCTTGCTTTGGAATACAGTGGCAAGGCCACTAAAATCCACCAGCGAGCGTTAGGTAACGATCATCCCATCACAGCGCGGAGTCTGGAGCTGCTGGCGACCGTCTATGCTGAGATTGGCAAGACAGAATATACAAATTCGTTGGGAGAGTGTGTGTCGACACTATCCAAGAGGTTCTCAGCCACAGAGTCTTTCAGCGATGCTCTGAGCAGCATCTCTTATAGCCATAAAGACAGAAACTCTGAGCTACGACACAGAAAAGAGCCATACACACTACAAGACACTCTTAAAACTAAGGTAAAACTATAAAGAGAATCCGGTGTAAAG
>TCONS_00023232
GAGCAGAAGCAGCATTGATGTGTTCCCGTTTTAAGCGCACAGTGACCCATCTTTCAGCGTCCGACTGCGTTTTCCGAGCGTCTCCGTTTCTCCATGCGCGCGCCGCGGCTCAGATGGGAGACGTAAGTGAAGCTTCTGACTGGCACGGGAACGCACGCGGTGGGTCTCTCTGGTGGGCCATCCCGAGCACGGGATGCTGAACGGGAGCCGCGAGGGTTTGTTTGAACTAGGCAGGCAGCTCCAGCAGGACGGAGACTCCCAAGCCGCACTGCACTGCTTTCTAAGCTGCCTGCTGGGACTCACACATGTGCAGAGCTTCCACTCGCTTCCCAACTGCCTgcatcagCATGTCTAATCCTTCACCCGTATAAAATCAGATGGGAAAGCTCTGCAGTTCATTCAGGCGGAGAAGATGTTCTATGAAGTGGCATTGATCGAGCTCACATCGCTGCAGGCCAGCACAGGGTCTCAGGAAGACGGGACATTGGGGTCGTCAGGATGTCTGTCTCAAGAGGAGCTATCAGAACAGGCTTCACAGGCCCAGGATCTTGAGAGACTGGCGCAGCTCTGCATCATGAGCAAAAGACCCCATCTTGCTTTGGAATACAGTGGCAAGGCCACTAAAATCCACCAGCGAGCGTTAGGTAACGATCATCCCATCACAGCGCGGAGTCTGGAGCTGCTGGCGACCGTCTATGCTGAGA

Function

symbol description
si:dkey-206p8.1 Predicted to enable connexin binding activity. Predicted to be involved in positive regulation of Golgi to plasma membrane protein transport. Predicted to be active in plasma membrane; trans-Golgi network; and transport vesicle. Is expressed in female organism.

GO:

id name namespace
GO:0042998 positive regulation of Golgi to plasma membrane protein transport biological_process
GO:0030133 transport vesicle cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071253 connexin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-460 Predicted to enable connexin binding activity. Predicted to be involved in positive regulation of Golgi to plasma membrane protein transport. Predicted to be active in plasma membrane; trans-Golgi network; and transport vesicle. Is expressed in female organism.

Ensembl:

ensembl_id ENSDARG00000096971

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023231 False 1047 mRNA 0.54 7 46387086 46439252
TCONS_00023232 True 704 nonsense_mediated_decay 0.56 5 46387217 46436233

Neighbor

gene id symbol gene type direction distance location
XLOC_011704 NA coding upstream 206849 46172679 ~ 46180237 (+)
XLOC_011703 kif26ab coding upstream 397620 45815353 ~ 45989466 (+)
XLOC_011702 dre-mir-203a coding upstream 578838 45808153 ~ 45808248 (+)
XLOC_011701 aspg coding upstream 612076 45737992 ~ 45775010 (+)
XLOC_011700 zgc:162184 coding upstream 708700 45648836 ~ 45678386 (+)
XLOC_011706 NA coding downstream 16538 46455790 ~ 46464176 (+)
XLOC_011707 pimr22 coding downstream 300441 46739693 ~ 46740881 (+)
XLOC_011708 NA coding downstream 304044 46743296 ~ 46825416 (+)
XLOC_011709 pimr14 coding downstream 379269 46818521 ~ 46820429 (+)
XLOC_011710 CU137681.6 coding downstream 409997 46849249 ~ 46849346 (+)
XLOC_011691 NA non-coding upstream 1037091 45348023 ~ 45349995 (+)
XLOC_011688 NA non-coding upstream 1186545 45193180 ~ 45200541 (+)
XLOC_011687 CU695222.2 non-coding upstream 1206340 45177626 ~ 45180746 (+)
XLOC_011711 CU137681.1 non-coding downstream 411774 46851026 ~ 46854102 (+)
XLOC_011713 CU137681.2 non-coding downstream 472638 46911890 ~ 46920595 (+)

Expression


Co-expression Network