XLOC_011711 (CU137681.1)


Basic Information

Item Value
gene id XLOC_011711
gene name CU137681.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 46851026 ~ 46854102 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023236
tcccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgctttaatgttaaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacatttttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagactcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggCATCAAGAACACGCAGATAGCCTACCTggacagactgcagttctgctactccatgccaaggcttttgtatggatgtcttgactactactgtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataacCGGAGCAAAACAATAGCatccgttacagtgaaatttgtgttcataaaagatagtgatatgtgtaacaggtccagtacatttgtcataaaggttatatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacatgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagtggaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatcaaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatacaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0048513 animal organ development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007417 central nervous system development biological_process
GO:0030902 hindbrain development biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097605

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023236 True 1509 lncRNA 0.39 4 46851026 46854102

Neighbor

gene id symbol gene type direction distance location
XLOC_011710 CU137681.6 coding upstream 1680 46849249 ~ 46849346 (+)
XLOC_011708 NA coding upstream 25610 46743296 ~ 46825416 (+)
XLOC_011709 pimr14 coding upstream 30597 46818521 ~ 46820429 (+)
XLOC_011707 pimr22 coding upstream 110145 46739693 ~ 46740881 (+)
XLOC_011706 NA coding upstream 386850 46455790 ~ 46464176 (+)
XLOC_011712 pimr27 coding downstream 10014 46864116 ~ 46866095 (+)
XLOC_011713 CU137681.2 coding downstream 57788 46911890 ~ 46920595 (+)
XLOC_011714 pimr26 coding downstream 80959 46935061 ~ 46936696 (+)
XLOC_011715 zgc:103755 coding downstream 236395 47090497 ~ 47237876 (+)
XLOC_011716 NA coding downstream 266177 47120279 ~ 47122203 (+)
XLOC_011704 NA non-coding upstream 670789 46172679 ~ 46180237 (+)
XLOC_011702 dre-mir-203a non-coding upstream 1042778 45808153 ~ 45808248 (+)
XLOC_011717 BX663528.2 non-coding downstream 343774 47197876 ~ 47197992 (+)
XLOC_011718 BX663528.1 non-coding downstream 384236 47238338 ~ 47251313 (+)
XLOC_011719 FP015963.1 non-coding downstream 537415 47391517 ~ 47391634 (+)

Expression


Co-expression Network