Gene
RNA
| Item | Value |
|---|---|
| gene id | G362143 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000154 |
| NCBI id | null |
| chromosome length | 1600967 |
| location | 953765 ~ 954053 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU412981 | True | 289 | lncRNA | 0.38 | 1 | 953765 | 954053 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000154_00864988_00870719 | PPM1NA | coding | downstream | 82421 | 864968 ~ 871344 (-) |
| CI01000154_00847380_00859545 | NA | coding | downstream | 92133 | 846782 ~ 861632 (-) |
| CI01000154_00797516_00828865 | PTGIR | coding | downstream | 124900 | 797401 ~ 828865 (-) |
| CI01000154_00756309_00761576 | SLC37A4A, SLC37A4 | coding | downstream | 191449 | 755829 ~ 762316 (-) |
| CI01000154_00744348_00748552 | SGCG | coding | downstream | 205213 | 744275 ~ 748552 (-) |
| CI01000154_00982864_00992761 | AP2S1 | coding | upstream | 27810 | 981863 ~ 993528 (-) |
| CI01000154_01213994_01216752 | TMEM160 | coding | upstream | 259031 | 1213084 ~ 1216752 (-) |
| CI01000154_01267269_01269079 | NA | coding | upstream | 312122 | 1266175 ~ 1269079 (-) |
| CI01000154_01303717_01309218 | NA | coding | upstream | 349386 | 1303439 ~ 1309285 (-) |
| CI01000154_01316706_01317237 | NA | coding | upstream | 362628 | 1316681 ~ 1317421 (-) |
| G362125 | NA | non-coding | downstream | 54376 | 899126 ~ 899389 (-) |
| G362119 | NA | non-coding | downstream | 70807 | 882173 ~ 882958 (-) |
| G362118 | NA | non-coding | downstream | 73827 | 879642 ~ 879938 (-) |
| G362117 | NA | non-coding | downstream | 74352 | 879141 ~ 879413 (-) |
| G362116 | NA | non-coding | downstream | 74864 | 878694 ~ 878901 (-) |
| G362145 | NA | non-coding | upstream | 5741 | 959794 ~ 971612 (-) |
| G362148 | NA | non-coding | upstream | 26611 | 980664 ~ 980951 (-) |
| G362153 | NA | non-coding | upstream | 42400 | 996453 ~ 1060750 (-) |
| G362218 | NA | non-coding | upstream | 133888 | 1087941 ~ 1088213 (-) |
| G362287 | NA | non-coding | upstream | 211401 | 1165454 ~ 1170084 (-) |
| CI01000154_01524327_01555571 | NA | other | upstream | 577664 | 1524267 ~ 1555647 (-) |
