XLOC_011731 (CABZ01088109.1)


Basic Information

Item Value
gene id XLOC_011731
gene name CABZ01088109.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 48964632 ~ 49019651 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023264
catttacatttatgaataaaaaaattccaTACATATTGAGTAAATTAACAATATGCCACATTTTGAAGTCGACTGTATTCTCATAAAAAAtaagacatctttttttttaaattccaatGCAATATTCATACTCTGCCTAACAAAAAAGAAAGGATCACACCAAAACTATTGTGTATAAATGCAGTTAtaacataaatgaaaaatactATCTTCTTTATCGTTACAGAAAGCACATTTTAAGACAACATCTTTACAAAAATTACCTGTTTTACAGGATGAATATAATGAACAATTTTAAATGATAcctctttgattttatttgtcaTACAAAAACGTTTGAAAATCTTAAATGTCTCGTTCCAGTTAACATCTTGAAATTGTGAGCACCAATGGCTGAAGGAATATTGACAATACAagattgttatttaatttttttttcttttatatttataccTTATAATTTAAGACTAAGATCAAAATTTGTATTTTGAATTATACCATTTTCTAATAGTTTCTTAAGCTTAGACGCATCCATTCTTTACAGCGCTTTGTTCATTTCCTCAACCTACCGAGTCTCTCCGGAGGAGTCGACTCAGTGTTTGTTCGATTCGGTCTGTGTTTGTCTGCGCGTTGTCAGCCATGTTAGCGCCCTCCTCCATCTCGACCACTGCTAACTTTAGGACATGCTTGCTCCAGGCCGGCTGTGAGGACGAAGAGCTTTAATTCTTTCTATCCGCTTGAAAGAACATTACCAAATTTACACAATGGAGGCCGTCAAGGCGTTTAACGGCGAGttgtaCTCATTGAATGAATACAAGCCACCTATCTCCAAAGCCAAGATGACCCAGATTACAAAGTCAGCAATTAAAGCTATAAAGTTCTACAAACATGTTGTCCAAAGTGTGGAGAAATTCATTCAAAAGTGCAAACCCGAGTACAAAGTTCCTGGTCTGTATGTCATCGACTCCATTGTACGGCAGTCCCGTCACCAGTTTGGTCAAGAGAAAGATGTTTTCGCTCCACGCTTCAGTAAGAACATCATTGGCACGTTCCAAAATCTCTACCGCTGCCCGACAGACGACAAGAGCAAGATTGTCAGAGTGCTCAACTTATGGCAGAAAAACAACGTCTTCAAGAGCGACATCATTCAGCCTCTACTGGATATGGCAGCAGGTCTTCCACCGCCCAGCGTTACGCCCGTCTCTGCCAGTAGTGTCATACCCATGAACAGCACTACTCCTGGAACTCCTGCAACTCCAGCCACCCCTGCCAATATAGTGCAGAGTCTTCCAGACTGGGCGTCTCAGATCTCCAACACAGACACTGTGGCTGCAGTTGCCCAGATCTTGCAGAGTCCTCAGGGCCAGCAGTTGCAGCAGCTGGTTCAGAGCCTGCAGATGCAGCAGCAGAAGCCTCAGCCCTCTCTGCTGCAGGCGCTGGATGCTGGTTTGGTGGTGCAGCTTCAGGCTTTGACTGCACAACTCACTGCAGCTGCAACAGCCAACAAACTCAACCCACTGGAACAGAGAGTTTCCTCCTTCAACAAGAAGCTGCTGGGTCAGTTTGATTTCGGGAATGAGTCTGAACACAGCGAGGATTCGAAGAAAGATTCTGCGTCCTCTCAGATACCTGTGCTGTCAGATTCCATCAACAGCTCAATATTTCATCAGCTGGCGGAGCATCTTCAGCAGCAAAACCTCGAGCAGTTTCAGAAACAGCTAATGGAGCACCAACAGCATCAACAGAAGTCTATGAGCATGGAGAGCCAGGACGCTATTTTTGGCACTGAAAATTCTGCCCCATCTGGCCAGAGCAGCGCCCCGTCACAGCACCAAGTTCAAGAATCAAAAATGGATGATTCCATGGACAACCAACAACAGGACATGGATATTGATGAGGGACAGGATGTGGTCGATGAGGAGCTCTTTGAGACGGATGAGAAGAAAACCAGCAGCACCCGTTCAAGGACGCGCTCAAGATCCCGCTCTAGGTCACCTAAGAGGAGGAGGTCAAGATCACGCTCTGGGTCTCGGAAGCGGAAACACAGAAAACGCTCAAGGTCTCGGTCAAGGGACCGAAAGAGGAAGTCCTCCCGTTCTTATTCCAGTGAGCGAAGAGCACGGGAGAGAGAAAAAGACCGGCAGAAAAAAGGGCTTCCTCCAATCCGCTCGAGGGTTCTCAGTGTTTGCAGCACTACTCTATGGGTTGGTCAAGTGGACAAGAAAGCCACCCAACAGGATCTCACAAACCTCTTCGAAGAGTTTGGCCAGATTGAATCTATCAATATGATTCCTCCCAGAGGCTGCGCTTACATCTGTATGGTCCATCGTCAGGACGCATATCGGGCTCTTCAAAAGCTGAGCACCGGCTCTTACAAAATTGGTTCAAAGGTCATCAAGATTGCTTGGGCTCTGAATAAAGGAGTCAAACAGGAGTACAAGCAGTTCTGGGATGTGGACCTCGGGGTCACTTATATCCCGTGGGAGAAGGTGAAACTGGATGACCTGGATGACTTTGCTGAGGGAGGCATGATTGACCAGGAGACGGTCAACAACGATTGGGAATCACAAAGGAATACGGAGACAGCCAAAGAGACTCCGAGTCAGCCAGTTAAAGCTGAAGCAAGTACAGCCAGCAGCACAGCCAGTGAGGCCTTCACACAGCCGGTCACTATGATGCCCATGCAGattccaGTGCCACAGACAGTCCCTGCTGTTGGCCTCGTTCCTCCATCCTTCCCTGTCACCATGGCAATGCCCCCACCAGGCTTCGGTCCCCCTCCACCTTTTCTAAGGGCAGGGTTTAATGCCTCCCAGCCTCCCCCAGGTTTCATGGCCACACCAGGAGTAGGGCCGTCAGCAGTGGGGGCAGTCACCAGTCTCGCTTCAGCTCAGAACTCTTTAGTACAGCCTGCGATGCCAAACACTCAAGACAGCAGCAAGGATTCTCCGTTTGGTGCCATGATGCCTCCCACCGGTACTATTCCTGGGAGCTTTATTCCATCAGCAATGCCTGGGGCACAAGTCTTTAACCCTGTCGGAGCACAGCATCAGCAGAGCAGCACAGACAAAACACCTCAGTCTGCAGACGCTATGGAGGCATCTTCTGAAATAACACTACAGGGAATGCAGAACGCAGTGCGCAGTGGAATGGGTCTGCTGGGTATGCATCCTTCTGCATCTCTGACGCATCCTCTCGCCGGGCAGAGGATGACAGGGCTGCTTCCATTGGAACTTCGTCCAAACCTGCTCCAGGGGCCTGGCGGCCGCTTCCCCCTACTTATGCAGCCAGGCCTTGCTCATCAGACCAACAACGTCCTGGATGCTTCACTTCAAGCCCAAGCCCGTCTCCGGGCTCCGTTTTCTCAAATGGAGCAGTTCAATCGTACGGAGGGTACTTTTATGAGGGCACCCAATCCCCCACCTGCTGTAAATGACAGTCTGATCAAGCCTAATAATGAGGCGCCACCCAGGTCTGATGTAGTCACCCAACAAGAGGGAGATCAGGATTATCGCTTTCCACCACCAGAGAAGCAAAGTACGGGGTTGCTGAAGACTCCTCCGCTGGAGATGCGAACAGAGCCTGGACCCGCCAGACCACCTCTGCTAGAAAGACCTCCGAGGGCAGTCATGCAAGCCGAGAGTCGAGAGGGTAGGAGAGAAAATGTGTCTGCTGGTTTCAGAGCAGAAAGTCGTtggggtccacccaggggggacTTTGATGAGCGAGACATGAGGGGGATGTCTGGTGGTTCAGCGAAGGGTTTCCAGGAAGAGCGGCCAAATAATAACTTTCAGAATCGATTTGAGGGCCGCAGCGGAGGTTCATCAGGACCCACTTGGAATCGTGGAACTGGACCTTCTTTTAACGCCAACATGAACCAAGATTACGATGATCGCCGCAGACCTTGGGAAAGGCAGAAGGACAGGGATGACAGGGATATGGACTTTAGGGGTGAAATGAATGGCAATCGTCATAGCCGGGAGCGCGACAGAGACCGTGAAAGGGAGAGGGACCGGAATCGGGAGCGCGAACGTGGCAGAGATCGGAATCGTGAGCGGGACAGGGAAAGGGAGAACGAGAAGGATAAAGAGCGGGAACGTTGGACTCCTCTTTCTTCACAGTCTCAACCGCTGCTTCCTCAAGCCAAGCCTCAACCGCTACTTCCTTTACCGACCCCCTTGCTTCCTCGGCCTCCAGCACAAGAACCAGTGCAAACGAACTCGCAGTCTTCACCGGTCCTCCACCCTGATCCTCAACCCCAATCAACAGAACCAGCTGCGGAACCACAAGCCGAGGTCAAGCCAGAGCCGCAGTCTCTCAGCCCACCTGAAGAGACGACAAGTAGTCAAGAGGACACTGCTGCTTCATGCGTCAACGGAATGGAGACTGATTCCAAACCTCAGTCGGAACCTGCATCCCAGACTGCTACAGAGCCCTCTAGTAGCCCCTATCCATCTCTGACCTCCACTCCCGCCTGCTTCGAGAACGAGCCCCCGAACGGAGAGAACCCCCCAGAAATGTCTGTTTCCGCATCTGTGGACGCAGACGCTGAACAGACTGGGCCAAAGGTGAACGCTGAGACTGAACCTGAGCTTGAGAAAAGTGACACTGAGGAAACATAATCATCACTCAGTAGGTAAAGATCATTTTGTATAGTCATCTCTGTAATGGTTTTGAAAGCTCTCACAGGAATCCCCTTCAGTTCAGTTGTGCTCAGTTTTAGGATGTTCTAGACACCTTAACGAATGATTCTTACCTCTCAAGCTTCAAATGTACGTTCGTTCTAGGCGGCTCACGCTAGAGGATCTAAATG
>TCONS_00023265
GTGTTTGTCTGCGCGTTGTCAGCCATGTTAGCGCCCTCCTCCATCTCGACCACTGCTAACTTTAGGACATGCTTGCTCCAGGCCGGCTGTGAGGACGAAGAGCTTTAATTCTTTCTATCCGCTTGAAAGAACATTACCAAATTTACACAATGGAGGCCGTCAAGGCGTTTAACGGCGAGttgtaCTCATTGAATGAATACAAGCCACCTATCTCCAAAGCCAAGATGACCCAGATTACAAAGTCAGCAATTAAAGCTATAAAGGTAGGTTTAAAAACAAGGTAACACAACTTTAAGGCCATCTTTAAGTTCTTCTACTAATTCCTCAATTCTCTTATGTAATCTTAGATttatactaggggtgtaacgattcaCCAGTGCCATGGTTTGGTACAGTTCACAATACTGGAGCCACGGTATGGTTCGGTTCTTTTTGCTGTGGGAGCAGGGCTTTTGGTGTGGCACCAGCAATGTTAAAGAACACTAGATTCACTTTTGACTTAATAATAGCAACAGTTCAGTACTTCCCACACACAGACTTTACTCGGGCGGGCCACAcatgtgcagttgaagtcagaattattagccccctttcgagtttttttttccttttgtaaatatttcccaaatagtgtttaacagagcaaggaaattttcacagtatgtctgataatattgtttcttatggagaaagtctgatttgttttattttggctagaaaaaatatttttatg
>TCONS_00023266
CCAGGCCGGCTGTGAGGACGAAGAGCTTTAATTCTTTCTATCCGCTTGAAAGAACATTACCAAATTTACACAATGGAGGCCGTCAAGGCGTTTAACGGCGAGttgtaCTCATTGAATGAATACAAGCCACCTATCTCCAAAGCCAAGATGACCCAGATTACAAAGTCAGCAATTAAAGCTATAAAGATttatactaggggtgtaacgattcaCCAGTGCCATGGTTTGGTACAGTTCACAATACTGGAGCCACG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0051276 chromosome organization biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0008023 transcription elongation factor complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0042393 histone binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100056

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023264 False 4816 lncRNA 0.49 20 48964632 49019651
TCONS_00023265 False 733 lncRNA 0.40 2 48965247 48970718
TCONS_00023266 True 254 lncRNA 0.44 3 48965324 48970400

Neighbor

gene id symbol gene type direction distance location
XLOC_011730 hs1bp3 coding upstream 2934 48947762 ~ 48961698 (+)
XLOC_011729 NA coding upstream 60610 48897360 ~ 48904022 (+)
XLOC_011728 daam2 coding upstream 71851 48831579 ~ 48892781 (+)
XLOC_011727 NA coding upstream 302988 48661290 ~ 48661644 (+)
XLOC_011726 NA coding upstream 306470 48657825 ~ 48658162 (+)
XLOC_011732 tiam2a coding downstream 62177 49081828 ~ 49218502 (+)
XLOC_011733 zgc:113176 coding downstream 256410 49276061 ~ 49306686 (+)
XLOC_011734 NA coding downstream 395169 49414820 ~ 49421370 (+)
XLOC_011735 CGA coding downstream 432381 49452032 ~ 49452502 (+)
XLOC_011736 AREL1 coding downstream 464989 49484640 ~ 49530045 (+)
XLOC_011725 NA non-coding upstream 345448 48616823 ~ 48619184 (+)
XLOC_011720 NA non-coding upstream 1218420 47745402 ~ 47746212 (+)
XLOC_011737 LO018408.2 non-coding downstream 491215 49510866 ~ 49511000 (+)
XLOC_011738 NA non-coding downstream 532242 49551893 ~ 49553677 (+)
XLOC_011739 CU929037.2 non-coding downstream 577461 49597112 ~ 49601114 (+)
XLOC_011742 CU655820.1 non-coding downstream 1102592 50122243 ~ 50190705 (+)

Expression


Co-expression Network