XLOC_011735 (CGA)


Basic Information

Item Value
gene id XLOC_011735
gene name CGA
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 49452032 ~ 49452502 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023276
ATGTTTTGGACAAGATACGCTGAAGCAAGCATTTTCTTGTTCTTAACGATTCTTCATGTCGGACAACTGTATTCAAGAAATGATGTGTCTGAAAATGGATGTGAAGAGTGCAAACTCGAGGTGAACAAACCTTTCACGTCCATTTCACCCGGGGCTCCGGTCTATCAGTGCGTGGGCTGCTGCTTTTCGAGAGCATACCCCACACCCCTGAGGTCCAAGAAAACCATGCATGTCCCAAAAAACATCACATCAGAAGCCACTTGCTGTGTagcaaaagaatttaaaatgatCGTCATCGCTAATATCCCACTATACAACCACACAGACTGCCACTGCAGCACCTGTTTCTATCAGAAGTCTTAA

Function

symbol description
cga Predicted to enable follicle-stimulating hormone activity. Predicted to be involved in positive regulation of steroid biosynthetic process and thyroid hormone generation. Predicted to be located in extracellular region. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Is expressed in several structures, including adenohypophyseal placode; female organism; hypophysis; kidney; and male organism. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide).

GO:

id name namespace
GO:0010893 positive regulation of steroid biosynthetic process biological_process
GO:0006590 thyroid hormone generation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016914 follicle-stimulating hormone complex cellular_component
GO:0005179 hormone activity molecular_function
GO:0016913 follicle-stimulating hormone activity molecular_function

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04923 Regulation of lipolysis in adipocytes
ko04929 GnRH secretion
ko04912 GnRH signaling pathway
ko04913 Ovarian steroidogenesis
ko04917 Prolactin signaling pathway
ko04918 Thyroid hormone synthesis
ko05320 Autoimmune thyroid disease

ZFIN:

id description
ZDB-GENE-040715-2 Predicted to enable follicle-stimulating hormone activity. Predicted to be involved in positive regulation of steroid biosynthetic process and thyroid hormone generation. Predicted to be located in extracellular region. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Is expressed in several structures, including adenohypophyseal placode; female organism; hypophysis; kidney; and male organism. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide).

Ensembl:

ensembl_id ENSDARG00000103345

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023276 True 363 mRNA 0.44 3 49452032 49452502

Neighbor

gene id symbol gene type direction distance location
XLOC_011734 NA coding upstream 30662 49414820 ~ 49421370 (+)
XLOC_011733 zgc:113176 coding upstream 145346 49276061 ~ 49306686 (+)
XLOC_011732 tiam2a coding upstream 233530 49081828 ~ 49218502 (+)
XLOC_011731 CABZ01088109.1 coding upstream 432381 48964632 ~ 49019651 (+)
XLOC_011730 hs1bp3 coding upstream 490334 48947762 ~ 48961698 (+)
XLOC_011736 AREL1 coding downstream 32138 49484640 ~ 49530045 (+)
XLOC_011737 LO018408.2 coding downstream 58364 49510866 ~ 49511000 (+)
XLOC_011738 NA coding downstream 99391 49551893 ~ 49553677 (+)
XLOC_011739 CU929037.2 coding downstream 144610 49597112 ~ 49601114 (+)
XLOC_011740 zgc:113372 coding downstream 184755 49637257 ~ 49642366 (+)
XLOC_011729 NA non-coding upstream 548010 48897360 ~ 48904022 (+)
XLOC_011727 NA non-coding upstream 790388 48661290 ~ 48661644 (+)
XLOC_011726 NA non-coding upstream 793870 48657825 ~ 48658162 (+)
XLOC_011742 CU655820.1 non-coding downstream 669741 50122243 ~ 50190705 (+)
XLOC_011747 NA non-coding downstream 973102 50425604 ~ 50426685 (+)

Expression


Co-expression Network