CI01000158_01453526_01476090 (MEF2C, MEF2CA)


Basic Information

Item Value
gene id CI01000158_01453526_01476090
gene name MEF2C, MEF2CA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1453029 ~ 1476090 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_01453526_01476090.mRNA
TGCAGTAGCACGATTAGCCCCCCCTCCACACCCACCCTTTCCCGTGTTGTGGTGGTGGAGCTCTCAGTGGATGTTCTGTGTGAGACGTCTTACCGTGCAGCAGATTCTCCGAAAAAAAACTTGCATGATTCTTTACAAAGGCAACACGCTCGCTCATATAAGGTTACGTTTACAAAGAGGAAGTTTGGACTAATGAAAAAGGCCTATGAGCTGAGCGTTCTGTGCGACTGTGAGATCGCCCTCATCATCTTCAACAGCACTAATAAACTGTTCCAGTACGCCAGCACCGACATGGACAAAGTTCTGCTTAAATACACTGAGTACAATGAGCCCCATGAGAGCCGGACGAATTCGGACATCGTGGAGTGTAACACCGTTCGGCAGGCCATTTGCAACGTTGACACATGCATTACAAGCAAAGCCCTGGGGTCAGACTTAGCTGGGATTCTGCTGGTTTTTTATGAGGCTGAGAGGGAAAACAGCATGGCTTGCCTCATGAGGGAAGAAACATCACGTCTCCACGAGGCAAATCTCATGGACACCCTGCCAAGCCAAGAGGAAACGAAGAGTTCATTTGATTACGTGACATCTCGTGGCATGCTCCTCTACACTTCCCAGACTGTTTCTGTCGGCTCATATCTGCCATCTGTTCTGCTATGTAAACTTGAAAACACGGGTACTGAGAGCATCAAAGGAGGTAAATTACCCAGAAGTCCCCAGTGTGGCATTTTCCAAACGTTGCCCAGCTGCTGTGGTCAGAGCAGCTGGTGGAAAGAACCCTGGAGGAGGGCCAGACAGTGCCACGCATTGGCCATGCGACCTGCCGCAGGAACGGGGGCGTCCCTGATTGCTCACCCGTACGTCTCTAATAGGATTCCGCCTCTTTTACGGTCGGAATCAACTCTGAGGAAGAAGGGTCTAAATGGCTGTGACAGTCCTGATATTGATGCTGAAGATTCAGGCCACAGTCCAGAATCGGAGGACAAATATCGCAAAATCAACGAGGACATTGACCTGATGATCAGCAGGCAGAGACTGTGTGCCATCCCCCAGTCTAATTACGACATGCCCATCTCAATCCCTGTGAGCAACCCCAACAGCCTGATCTACAGCCACCCAGGAGCGTCCCTGGGCAACCCCAACCTGCTGCCGCTGGCCCACCCCTCCCTCCAGAGGAACAGCATGTCCCCTGGAGTGACCCACCGTCCCCCGAGTGCAGGCAACACAGGTGGCCTTATGGGTCCAGACCTCAGCAGCGGAGTGGGCACCAGTGCTGGAAACGGGTATGGAAACCACCGCAACTCCCCTGGTCTGCTGGTCTCTCCGGGGAGCATGAGTAAGAACATGCAGGCCAAGTCTCCTCCGCCCATGAGCATGAGCATGAGCAACCGCAAGCCCGACCTGCGCGTCCTGATCCCCCCCGGCTCAAAGAACACCATGCCCTCCATCTCGGAGGATGTTGACATGTTGCTGAACCAGAGAATAAACAACTCCCAGTCCGCCCAGTCTCTGAGCACACCAGTGGTGTCTATAGCCACGCCCACTCTGCCAGGACAGGGAATGGGCGGCTACCCATCAGCCATCTCTACCTCATACGGTACAGGAACTGCACCAGCACACAGTTATGTCAGAGCTCCACCCTCTCGCTGCCGTCCAATCAGAGCCTGCACATCAAATCCGAACCCGTCTCTCCTCCCCGAGACCGGGCGGGAGGCACTCCGGGCGGCTACGCTCATCCTCTGCCCCCTCCTCCGCCCCAGCCGGCGTCCCAGCAGGGTCAGCTACGGCAGGATGCGGGCCGCTCCCCGGTCGACAGCCTGAGCAGCTGCGGCAGCTCGTACGAGGGCAGCGACCGTGAGGAGCACCGAGCCGACTTCCATTCGCCCATGGGACTGCTGAGACCCTCTCAGGACGAGCGGCACAGCCCGTCCGTCAAGCGCATGCGTCTGTCCGAGGGCTGGGCCTCGTGATTGCGCGGCCTGTGCTGGCTTTTCTATGTGGAGATTTCACTTTAGTATTATTATATTTGTTTCTGCGGAGTGTGAGTGCTACATCAAGTATTAAA

Function

symbol description
mef2ca Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including animal organ development; ligamentous ossification; and skeletal muscle myosin thick filament assembly. Predicted to be located in nucleus. Is expressed in several structures, including brain; mesoderm; musculature system; pericardial region; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 20. Orthologous to human MEF2C (myocyte enhancer factor 2C).
mef2c Enables several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and protein heterodimerization activity. Involved in several processes, including negative regulation of cell migration; positive regulation of cell differentiation; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear speck. Part of protein-containing complex. Implicated in autosomal dominant mental retardation 20.

GO:

id name namespace
GO:0030224 monocyte differentiation biological_process

KEGG:

id description
K04454 MEF2C; MADS-box transcription enhancer factor 2C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_01453526_01476090.mRNA False 2065 mRNA 0.55 12 1453282 1476090

Neighbor

gene id symbol gene type direction distance location
CI01000158_01410134_01419385 NA coding downstream 33617 1409995 ~ 1419665 (-)
CI01000158_01366017_01386733 EDIL3B coding downstream 66549 1365460 ~ 1386733 (-)
CI01000158_01341073_01343685 NA coding downstream 109247 1341073 ~ 1344035 (-)
CI01000158_01339302_01340074 HAPLN1B, HAPLN1 coding downstream 113208 1339236 ~ 1340074 (-)
CI01000158_01262724_01264911 NA coding downstream 188371 1262005 ~ 1264911 (-)
CI01000158_01487198_01495799 NA coding upstream 10699 1486789 ~ 1495906 (-)
CI01000158_01534561_01537689 MGC82201, CETN3.L, CETN3, BRAFLDRAFT_115461 coding upstream 58382 1534472 ~ 1538085 (-)
CI01000158_01561252_01564385 ARRDC3B coding upstream 85162 1561252 ~ 1564563 (-)
CI01000158_01595127_01599555 NA coding upstream 118870 1594960 ~ 1600310 (-)
CI01000158_01602975_01638158 MCTP1B coding upstream 126832 1602922 ~ 1638158 (-)
G364112 NA non-coding downstream 5477 1426023 ~ 1447805 (-)
G364116 NA non-coding downstream 15802 1358156 ~ 1437480 (-)
G364115 NA non-coding downstream 19116 1358463 ~ 1434166 (-)
G364076 NA non-coding downstream 117347 1254047 ~ 1335935 (-)
G364200 NA non-coding upstream 189840 1665930 ~ 1666140 (-)
G364109 NA non-coding upstream 193300 1669390 ~ 1671108 (-)
G364229 NA non-coding upstream 303120 1779210 ~ 1789155 (-)
G364268 NA non-coding upstream 378521 1854611 ~ 1869953 (-)
G364286 NA non-coding upstream 422858 1898948 ~ 1899444 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP other downstream 730770 717291 ~ 722084 (-)
CI01000158_00286848_00307666 NA other downstream 1137893 286545 ~ 307666 (-)
G364203 NA other upstream 211876 1687966 ~ 1688828 (-)

Expression


Co-expression Network